Detailed information of component protein


Summary

Component ID T6CP011756
Component protein type TagL
T6SS ID (Type) T6SS00345 experimental (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Replicon chromosome
Sequence Protein sequence (566 a.a.); Nucleotide sequence (1698 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) KP1_RS15780
Coordinate (Strand) 3211181..3212878 (-)
NCBI ID WP_014907359.1
RefSeq NC_012731
Uniprot ID A0A652PZ22_9ENTR, A0A332GY52_KLEPN, A0A3F3AY53_KLEPN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 1.1e-18 435..531
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MRDNAR
Transmembrane helix 7-29 RLLTILTVILALWLVLGFWPLSI
Outside 30-32 GNQ
Transmembrane helix 33-50 VIFSLCILLAGGAALWRQ
Inside 51-313 RRRAVSRQRSEIVLPPEDFQGAVVLVCGDTDGLFPGRSAHGETRHGWYLRGDSAEQLPGLAQYLAAARPALVSQVSVLLAVVPEHHPSGEHLAQSLRDWRRSIVQCRTWLNGLPPVWSVFWVTPPGGQAGESRWFTITPERPGLQVQQKGQAPQAVAGWQREGSPASRLHQTLWLESILTLAENALFRPFRARQAELPPLNLCAAGICLTPVAAVANNLWQQQIAAITTLSPGNDAAPGPHPLPDLLLSSLPHRHGVSRRMRD
Transmembrane helix 314-333 AGLSAGVGFLFLALAMLASF
Outside 334-565 INNQRLVRSVGDHLAVYHRLSGTPPTPKLQAQQRLRADSRLLDDWLRRGEPLRYRLGLYQGGRLIPFVEAAINDWAPPPPPRPVIKQVVQGPQTIRLDSMALFDTGKSALKPGSTKLLVNSLLGIKAKPGWLIVVAGHTDSIGNDRSNQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQKDACLTPGTANTSGVETNGLKSETE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -


  Protein sequence: 566 a.a.    

>T6CP011756 NC_012731:c3212878-3211181 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TagL]
MRDNARRLLTILTVILALWLVLGFWPLSIGNQVIFSLCILLAGGAALWRQRRRAVSRQRSEIVLPPEDFQGAVVLVCGDT
DGLFPGRSAHGETRHGWYLRGDSAEQLPGLAQYLAAARPALVSQVSVLLAVVPEHHPSGEHLAQSLRDWRRSIVQCRTWL
NGLPPVWSVFWVTPPGGQAGESRWFTITPERPGLQVQQKGQAPQAVAGWQREGSPASRLHQTLWLESILTLAENALFRPF
RARQAELPPLNLCAAGICLTPVAAVANNLWQQQIAAITTLSPGNDAAPGPHPLPDLLLSSLPHRHGVSRRMRDAGLSAGV
GFLFLALAMLASFINNQRLVRSVGDHLAVYHRLSGTPPTPKLQAQQRLRADSRLLDDWLRRGEPLRYRLGLYQGGRLIPF
VEAAINDWAPPPPPRPVIKQVVQGPQTIRLDSMALFDTGKSALKPGSTKLLVNSLLGIKAKPGWLIVVAGHTDSIGNDRS
NQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQKDACLTPGTANTSGVETNGL
KSETE*

  Nucleotide sequence: 1698 bp    

>T6CP011756 NC_012731:c3212878-3211181 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TagL]
ATGCGTGATAACGCTCGTCGTCTGCTTACGATACTGACCGTCATCCTGGCCCTGTGGCTAGTGCTGGGCTTCTGGCCGCT
GTCCATCGGCAACCAGGTGATCTTCAGTCTGTGCATCCTGCTGGCGGGCGGCGCGGCGCTCTGGCGTCAGCGTCGCCGGG
CAGTCAGCCGTCAGCGATCGGAAATCGTCCTGCCGCCCGAGGATTTTCAGGGGGCAGTGGTTCTGGTCTGCGGGGATACC
GACGGTCTGTTTCCCGGGCGTTCGGCGCACGGCGAAACCCGTCACGGCTGGTATCTACGGGGAGACAGCGCGGAGCAATT
GCCGGGGCTGGCGCAGTACCTGGCGGCGGCGCGTCCGGCACTGGTATCGCAGGTTTCCGTGCTGCTGGCGGTGGTACCGG
AGCACCACCCCTCCGGGGAGCATCTGGCGCAGTCGCTGCGCGACTGGCGGCGGAGTATCGTTCAGTGCCGAACCTGGCTA
AACGGTCTGCCGCCGGTGTGGAGCGTGTTCTGGGTGACGCCGCCAGGCGGCCAGGCAGGGGAAAGCCGCTGGTTTACCAT
CACGCCGGAGAGGCCTGGGCTCCAGGTGCAGCAGAAGGGACAAGCGCCCCAGGCGGTTGCCGGGTGGCAGCGGGAGGGCA
GCCCTGCCTCACGCCTGCATCAGACGCTGTGGCTGGAGAGCATTCTGACCTTGGCCGAAAACGCTCTTTTCCGGCCATTC
CGCGCCCGGCAGGCGGAACTTCCTCCGCTGAACCTGTGTGCCGCGGGCATCTGCCTGACACCGGTAGCGGCGGTGGCGAA
TAACCTCTGGCAACAGCAAATCGCCGCGATCACCACGCTCTCCCCGGGCAACGACGCGGCGCCAGGTCCTCACCCGCTGC
CGGATCTTCTTCTGTCGTCACTGCCGCACCGCCACGGGGTCAGCCGCCGGATGCGCGATGCCGGTCTTTCCGCTGGGGTG
GGCTTCCTCTTTCTGGCGCTGGCGATGCTGGCTTCCTTTATCAACAACCAGCGCCTGGTGCGCAGCGTCGGCGATCATCT
GGCGGTGTACCACCGCCTCAGCGGCACGCCGCCGACGCCGAAGCTGCAGGCGCAGCAGCGTCTGCGTGCCGACAGCCGCC
TGCTGGATGACTGGTTGCGCCGGGGGGAGCCGCTGCGTTATCGGCTGGGGCTGTATCAGGGGGGGCGGCTGATCCCCTTC
GTGGAAGCCGCTATCAATGACTGGGCGCCGCCCCCGCCGCCGCGTCCGGTCATTAAGCAGGTTGTGCAGGGGCCGCAGAC
GATCCGCCTCGATAGCATGGCGCTGTTCGATACCGGCAAATCGGCGCTGAAACCGGGTTCGACAAAGCTGCTGGTGAACT
CGCTGCTGGGCATTAAGGCCAAACCCGGCTGGCTGATCGTGGTGGCAGGCCATACCGACAGCATCGGCAACGATAGATCC
AATCAACAACTCTCCCTGAAGCGTGCCGAGGCGGTCCGCGACTGGATGCGCGATACCGGCGATGTGCCGGAGAGCTGTTT
TGCGGTGCAGGGCTACGGCGCAAGCCGTCCTGTCGCCAGCAACGAGACGCCAGAGGGGCGGGCGCAAAATCGCCGGGTGG
AGATCAGTCTGGTCCCGCAGAAGGACGCCTGTCTGACGCCGGGCACGGCCAATACCTCAGGAGTAGAGACTAACGGATTA
AAAAGCGAAACCGAGTAA