Detailed information of component protein


Summary

Component ID T6CP011752
Component protein type TssL
T6SS ID (Type) T6SS00343 experimental (Type i4b)
Strain Burkholderia glumae BGR1
Replicon chromosome I
Sequence Protein sequence (356 a.a.); Nucleotide sequence (1068 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS01985
Coordinate (Strand) 411501..412568 (-)
NCBI ID WP_012734487.1
RefSeq NC_012724
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 1.4e-23 253..347
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MTTSVLPPRRRQ
Transmembrane helix 13-35 LAAALAAGAALCAGGLALLAAPA
Outside 36-355 GAFADNAGPATVTRVDPSGAAVRSTALPPSGAPAQGPSGGLSAPPQAEGGTSQNGTVLTGTNVAGGTGAGPVTGAGTGATVSVPPQASATPGQVVVGGKVPDEATKAAVLQKLRDTYGAGNVVDQIEVGDVATPPNWSSNVQKLIGPQLKQISKGQLRIDGTSIDVKGEVRNEALRQQVASDMANQLNPTYTIRNALRVSASEQGLLDQTLANRTIEFETGSATLTPQGRAILDQMAAAMSRMANRSVAIIGHTDNSGNRASNIALSQARADAVKGYLVAKGIPSQQLSTTGVGPDQPIASNDTAEGRARNRRIEFRAGQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
TAT(Tat/SPI) 0.9373 pos: 39-40. AFA-DN. MTTSVLPPRRRQLAAALAAGAALCAGGLALLAAPAGAFA


  Protein sequence: 356 a.a.    

>T6CP011752 NC_012724:c412568-411501 [Burkholderia glumae BGR1] [TagL]
MTTSVLPPRRRQLAAALAAGAALCAGGLALLAAPAGAFADNAGPATVTRVDPSGAAVRSTALPPSGAPAQGPSGGLSAPP
QAEGGTSQNGTVLTGTNVAGGTGAGPVTGAGTGATVSVPPQASATPGQVVVGGKVPDEATKAAVLQKLRDTYGAGNVVDQ
IEVGDVATPPNWSSNVQKLIGPQLKQISKGQLRIDGTSIDVKGEVRNEALRQQVASDMANQLNPTYTIRNALRVSASEQG
LLDQTLANRTIEFETGSATLTPQGRAILDQMAAAMSRMANRSVAIIGHTDNSGNRASNIALSQARADAVKGYLVAKGIPS
QQLSTTGVGPDQPIASNDTAEGRARNRRIEFRAGQ*

  Nucleotide sequence: 1068 bp    

>T6CP011752 NC_012724:c412568-411501 [Burkholderia glumae BGR1] [TagL]
ATGACGACCTCCGTGCTCCCGCCGCGCCGCCGCCAGCTGGCCGCCGCGCTCGCCGCCGGCGCCGCGCTCTGCGCGGGCGG
CCTGGCCCTGCTCGCCGCGCCCGCCGGCGCATTCGCCGACAATGCCGGCCCCGCCACCGTGACGCGCGTCGACCCGAGCG
GGGCGGCGGTGCGCAGCACCGCGCTCCCGCCGTCGGGCGCACCGGCGCAGGGGCCGTCGGGCGGACTCAGCGCGCCGCCG
CAGGCCGAGGGCGGCACCAGCCAGAACGGCACCGTGCTGACCGGCACCAACGTCGCCGGCGGCACGGGCGCCGGCCCGGT
GACGGGCGCCGGCACCGGCGCGACCGTGTCGGTGCCGCCGCAGGCCAGCGCCACGCCGGGCCAGGTGGTGGTGGGCGGCA
AGGTGCCCGACGAGGCCACCAAGGCGGCCGTGCTGCAGAAGCTGCGCGACACCTACGGCGCCGGCAACGTGGTCGACCAG
ATCGAGGTGGGCGACGTGGCCACGCCGCCAAACTGGAGCAGCAACGTGCAGAAGCTGATCGGCCCGCAGCTCAAGCAGAT
CAGCAAGGGGCAGCTGCGCATCGACGGCACCTCGATCGACGTGAAGGGCGAGGTGCGCAACGAGGCGCTGCGCCAGCAGG
TGGCCAGCGACATGGCGAACCAGCTGAACCCGACCTATACGATCCGCAACGCGCTGCGCGTGAGCGCCTCCGAGCAGGGC
CTGCTCGACCAGACGCTCGCCAACCGCACGATCGAGTTCGAGACCGGCAGCGCCACGCTCACCCCGCAGGGCCGCGCGAT
CCTCGACCAGATGGCCGCCGCGATGAGCCGGATGGCGAACCGCTCGGTCGCGATCATCGGCCATACCGACAACTCGGGCA
ATCGTGCCTCGAACATCGCGCTGAGCCAGGCGCGCGCCGATGCCGTGAAGGGCTACCTGGTGGCCAAGGGAATCCCGTCG
CAGCAGCTGTCGACCACGGGCGTCGGCCCCGACCAGCCGATCGCCTCGAACGACACCGCCGAGGGGCGCGCGCGCAACCG
GCGCATCGAGTTCCGCGCGGGACAGTAG