Detailed information of component protein


Summary

Component ID T6CP011713
Component protein type PAAR
T6SS ID (Type) T6SS00312 experimental (Type i4b)
Strain Acinetobacter baumannii AB307-0294
Replicon chromosome
Sequence Protein sequence (88 a.a.); Nucleotide sequence (264 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ABBFA_RS11010
Coordinate (Strand) 2373416..2373679 (-)
NCBI ID 446090257
RefSeq NC_011595
Uniprot ID A0A0J0ZWV8_ACIBA, B0VB18_ACIBY
KEGG ID aby:ABAYE2405
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 9.5e-21 9..78
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-87 MASPYITIGCPTTGGGQVISGNSAFLIEGIAIACVGDKATCPAHKTVSTIVSGDPNMQVMGKAAARVNDSLSCGCKLLPKQSLVNQG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8984 - -


  Protein sequence: 88 a.a.    

>T6CP011713 NC_011595:c2373679-2373416 [Acinetobacter baumannii AB307-0294] [PAAR]
MASPYITIGCPTTGGGQVISGNSAFLIEGIAIACVGDKATCPAHKTVSTIVSGDPNMQVMGKAAARVNDSLSCGCKLLPK
QSLVNQG*

  Nucleotide sequence: 264 bp    

>T6CP011713 NC_011595:c2373679-2373416 [Acinetobacter baumannii AB307-0294] [PAAR]
ATGGCTAGCCCTTACATTACGATTGGATGCCCAACGACAGGTGGAGGGCAAGTCATTTCTGGTAATAGTGCATTTTTAAT
TGAGGGAATCGCAATTGCATGTGTAGGTGATAAAGCAACTTGTCCGGCGCATAAAACGGTTTCTACGATTGTTTCCGGTG
ACCCAAATATGCAAGTGATGGGAAAAGCAGCAGCAAGAGTAAATGATTCATTATCGTGTGGCTGTAAATTATTACCGAAA
CAAAGTTTGGTTAATCAAGGGTAG