Detailed information of component protein


Summary

Component ID T6CP011697
Component protein type FHA
T6SS ID (Type) T6SS00302 insolico (Type i1)
Strain Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Replicon chromosome
Sequence Protein sequence (429 a.a.); Nucleotide sequence (1287 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SED_RS06285
Coordinate (Strand) 1219103..1220389 (-)
NCBI ID 446719629
RefSeq NC_011205
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-428 MAEEKARQQTLSLHVVNGNELESGRTARCLFTGDGDVGHGSECHWPVQDRHQNVPAKAFSISLHDGAFCLHPLASPLWLNQAKVTAASDQVQLRQGDEIQTGHLILRVYLNQGGMRHYDEEMATPETIVSNHDLLSDTLLSTDGAPEYPGMPSRHQLADTVVNGFSTDPLQVLQAESLTTRDNPLAGITPARPSAPLSDPAINGGINTPFMDLPSMYADPHDNEEGMSPADAAQRHLAVTPLLRGLGGSLAVHNTQDADDFLEEAGRTLQAAIQGLLELQQRRNSLSDKHLRPLEDNPLRLNMDYATALDVLFAEGKSPVHLAAPAAVSESLRNIRHHEEANRAAIVESLRVLLDAFSPQSLMRRFVQYRRSHELRKPLDDAGAWQMYCDYYDELASSRQQGFEMLFNEVYAQVYDRVLREKQREPEA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9821 - -


  Protein sequence: 429 a.a.    

>T6CP011697 NC_011205:c1220389-1219103 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [FHA]
MAEEKARQQTLSLHVVNGNELESGRTARCLFTGDGDVGHGSECHWPVQDRHQNVPAKAFSISLHDGAFCLHPLASPLWLN
QAKVTAASDQVQLRQGDEIQTGHLILRVYLNQGGMRHYDEEMATPETIVSNHDLLSDTLLSTDGAPEYPGMPSRHQLADT
VVNGFSTDPLQVLQAESLTTRDNPLAGITPARPSAPLSDPAINGGINTPFMDLPSMYADPHDNEEGMSPADAAQRHLAVT
PLLRGLGGSLAVHNTQDADDFLEEAGRTLQAAIQGLLELQQRRNSLSDKHLRPLEDNPLRLNMDYATALDVLFAEGKSPV
HLAAPAAVSESLRNIRHHEEANRAAIVESLRVLLDAFSPQSLMRRFVQYRRSHELRKPLDDAGAWQMYCDYYDELASSRQ
QGFEMLFNEVYAQVYDRVLREKQREPEA*

  Nucleotide sequence: 1287 bp    

>T6CP011697 NC_011205:c1220389-1219103 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [FHA]
ATGGCGGAAGAAAAAGCGCGGCAACAGACGCTTTCACTGCATGTCGTTAACGGTAACGAGCTGGAGAGCGGACGTACCGC
ACGGTGTCTGTTCACCGGAGACGGCGATGTGGGCCACGGCAGCGAATGCCACTGGCCTGTTCAGGACCGGCACCAGAACG
TTCCGGCGAAGGCGTTCAGCATCAGCCTGCATGATGGCGCATTCTGCCTGCATCCGCTGGCATCGCCATTATGGCTGAAC
CAGGCTAAAGTCACGGCGGCCTCAGACCAGGTGCAGTTACGTCAGGGCGATGAGATCCAGACCGGGCATCTGATACTCCG
GGTTTATCTGAACCAGGGCGGGATGCGGCATTACGATGAGGAGATGGCGACGCCTGAAACCATCGTTTCTAACCACGACC
TCCTGTCGGACACGCTACTGTCCACGGACGGCGCGCCGGAATATCCGGGAATGCCGTCCCGCCATCAGCTCGCGGATACC
GTTGTTAATGGCTTTTCCACCGATCCGTTGCAGGTGCTCCAGGCTGAAAGTCTGACCACCAGGGACAATCCGCTTGCGGG
TATCACCCCGGCCCGGCCCTCCGCCCCGTTATCCGATCCGGCGATAAACGGCGGGATCAACACGCCGTTTATGGATCTGC
CGTCCATGTATGCCGATCCGCATGATAATGAAGAGGGCATGTCACCGGCAGACGCGGCGCAGCGCCACCTCGCCGTCACG
CCGTTACTGCGCGGGCTGGGGGGATCGCTTGCCGTGCATAACACCCAAGACGCCGATGATTTTCTGGAGGAGGCCGGAAG
GACATTGCAGGCGGCGATTCAGGGGTTGCTTGAGCTACAGCAGCGCCGCAACAGCCTGTCAGACAAGCATCTGCGCCCGC
TGGAAGATAACCCGCTGCGCCTGAATATGGACTACGCCACGGCGCTGGACGTGCTGTTTGCCGAAGGGAAAAGCCCGGTA
CATCTGGCCGCGCCCGCCGCCGTCAGCGAGAGCCTGCGCAATATTCGTCATCACGAAGAAGCCAACCGCGCCGCGATTGT
GGAATCGCTGCGCGTGCTGCTGGACGCCTTCTCGCCACAGAGTCTGATGCGCCGTTTTGTGCAGTACCGCCGCAGCCACG
AACTGCGTAAACCGCTGGATGATGCCGGTGCGTGGCAGATGTACTGCGATTATTACGATGAGCTGGCCTCCAGCCGCCAG
CAGGGTTTTGAGATGCTGTTTAACGAAGTGTATGCCCAGGTGTATGACCGGGTGTTGCGTGAAAAGCAGCGGGAGCCGGA
AGCATGA