Detailed information of component protein


Summary

Component ID T6CP011673
Component protein type PAAR
T6SS ID (Type) T6SS00275 experimental (Type i3)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (85 a.a.); Nucleotide sequence (255 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPHY_RS40105
Coordinate (Strand) 681696..681950 (+)
NCBI ID WP_012405343.1
RefSeq NC_010625
Uniprot ID UPI0001736359
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 1.8e-11 2..48
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-84 MRPVVLVGHRHSCPIHGMGTVTNGTSGVTVNGRAVARIGDGTSCGATISTGSASTFGGAGAARKGDTTSHGGTLIDGDDGWLLD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.5897 - -


  Protein sequence: 85 a.a.    

>T6CP011673 NC_010625:681696-681950 [Paraburkholderia phymatum STM815] [PAAR]
MRPVVLVGHRHSCPIHGMGTVTNGTSGVTVNGRAVARIGDGTSCGATISTGSASTFGGAGAARKGDTTSHGGTLIDGDDG
WLLD*

  Nucleotide sequence: 255 bp    

>T6CP011673 NC_010625:681696-681950 [Paraburkholderia phymatum STM815] [PAAR]
ATGCGTCCAGTTGTTCTAGTAGGTCATCGCCATTCTTGTCCTATACACGGTATGGGCACCGTCACCAATGGCACGAGCGG
AGTAACGGTCAATGGCCGCGCCGTGGCTCGTATCGGAGACGGAACGAGTTGTGGAGCGACTATATCCACTGGCTCTGCCT
CAACATTCGGCGGCGCGGGTGCCGCCCGTAAGGGCGACACCACCAGCCATGGCGGTACCCTGATCGATGGCGATGATGGC
TGGCTCCTGGACTAA