Detailed information of component protein


Summary

Component ID T6CP011670
Component protein type FHA
T6SS ID (Type) T6SS00272 experimental (Type i1)
Strain Proteus mirabilis HI4320
Replicon chromosome
Sequence Protein sequence (423 a.a.); Nucleotide sequence (1269 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PMI_RS03660
Coordinate (Strand) 823320..824588 (-)
NCBI ID WP_012367722.1
RefSeq NC_010554
Uniprot ID B4ET56_PROMH
KEGG ID pmr:PMI0744
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-422 MDKYQPTISFSIKNSEQLESGYLPNATLTQSSGQIGSGNQCDWKIQDNEGAIADRQCTVFWKDQHFCLKVNSGPVYINNAIIPLHLDAVRLTQGDQIKVGKLVIATNISLTGEPVQNMMAMTPQSIIAKDHNPLDSLFDVDTTVKNERKEPPFVPTVQGALTTDPLQALENENLSLISKNTQATSDDPLLSDPHSYSSAFPTSDNQENTMVQEFIDLPKITPNENEHMTDVDHVAVNPLMKGLGIHLNLTNTQHANDFLVELGKTVKAAIEGLLILQQQQESLQDKQLRPIEDNPLRLNSGYEETMKLMFTDERSPVHLSAPAAVTESLHNIQLHYQANQEAISTALSTMLAAFSPEHLLNRFSQYRRASDNTPMNDGWAWEMYNNYYKELSSSRQQGFEKLFYEVYSHAYDRALRKGIEEA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9604 - -


  Protein sequence: 423 a.a.    

>T6CP011670 NC_010554:c824588-823320 [Proteus mirabilis HI4320] [FHA]
MDKYQPTISFSIKNSEQLESGYLPNATLTQSSGQIGSGNQCDWKIQDNEGAIADRQCTVFWKDQHFCLKVNSGPVYINNA
IIPLHLDAVRLTQGDQIKVGKLVIATNISLTGEPVQNMMAMTPQSIIAKDHNPLDSLFDVDTTVKNERKEPPFVPTVQGA
LTTDPLQALENENLSLISKNTQATSDDPLLSDPHSYSSAFPTSDNQENTMVQEFIDLPKITPNENEHMTDVDHVAVNPLM
KGLGIHLNLTNTQHANDFLVELGKTVKAAIEGLLILQQQQESLQDKQLRPIEDNPLRLNSGYEETMKLMFTDERSPVHLS
APAAVTESLHNIQLHYQANQEAISTALSTMLAAFSPEHLLNRFSQYRRASDNTPMNDGWAWEMYNNYYKELSSSRQQGFE
KLFYEVYSHAYDRALRKGIEEA*

  Nucleotide sequence: 1269 bp    

>T6CP011670 NC_010554:c824588-823320 [Proteus mirabilis HI4320] [FHA]
ATGGATAAATATCAGCCAACAATTTCTTTTAGCATCAAAAATAGTGAACAGCTAGAAAGTGGTTATCTGCCAAATGCGAC
TTTAACTCAAAGTAGCGGACAGATTGGTAGTGGCAATCAATGTGACTGGAAAATCCAAGATAATGAAGGTGCTATTGCCG
ATCGGCAATGTACGGTGTTTTGGAAAGATCAACACTTTTGCTTAAAAGTAAATTCAGGTCCTGTTTACATTAATAATGCG
ATTATTCCATTGCATCTTGATGCCGTTAGACTGACCCAAGGTGATCAGATAAAAGTGGGTAAATTAGTTATTGCCACCAA
TATTAGTCTTACCGGAGAGCCGGTACAAAATATGATGGCGATGACGCCTCAGTCTATTATCGCAAAAGATCATAATCCGC
TAGATTCATTATTTGATGTTGATACAACAGTCAAAAATGAGCGGAAAGAGCCTCCGTTTGTACCAACCGTTCAGGGTGCA
TTAACAACAGATCCACTACAGGCTTTAGAAAACGAAAATCTAAGCTTAATTTCTAAAAACACACAAGCTACTTCAGACGA
TCCTTTATTGAGTGACCCCCACTCGTATTCATCTGCCTTTCCGACATCAGATAATCAAGAGAATACTATGGTCCAAGAAT
TTATTGATTTACCTAAAATCACACCTAATGAAAACGAACATATGACCGATGTCGATCATGTGGCGGTTAACCCTCTGATG
AAGGGATTAGGTATCCACCTTAATTTAACAAATACACAGCATGCTAATGATTTTCTTGTTGAACTGGGTAAAACCGTCAA
AGCGGCTATTGAAGGTTTACTGATTTTGCAACAACAACAAGAAAGCTTACAAGATAAGCAATTACGCCCAATTGAAGATA
ATCCTCTACGTCTTAATAGTGGCTATGAAGAGACAATGAAGTTGATGTTTACCGATGAACGTAGCCCTGTACATCTTTCA
GCACCTGCGGCAGTAACAGAAAGCTTGCACAACATCCAATTGCATTATCAAGCGAATCAAGAAGCTATTTCAACCGCACT
ATCAACCATGTTGGCAGCATTCTCTCCTGAACATTTATTAAACCGCTTTTCTCAGTATCGACGAGCTTCAGATAACACAC
CAATGAATGATGGCTGGGCTTGGGAAATGTACAACAACTATTACAAAGAACTCTCTTCATCTCGGCAACAGGGTTTTGAA
AAATTATTCTATGAAGTATACAGCCATGCTTATGACAGAGCGCTGAGAAAAGGAATAGAGGAAGCTTAA