Detailed information of component protein


Summary

Component ID T6CP011646
Component protein type FHA
T6SS ID (Type) T6SS00256 insolico (Type i1)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (439 a.a.); Nucleotide sequence (1317 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS01960
Coordinate (Strand) 425107..426423 (+)
NCBI ID WP_012303452.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-438 MDKKQPTLSLRVVNSDKLESGKQASSLFHAQGGSVGSDGSHHWSIQDQGGNISPSQFAIEWRDGSFCLRLLNGSLNINHSMLTPNSGFVRLQQGDEMTLGNLVIKSHISRSAADMIDPLMVSPESLVSSYSNPMDAMMEGEPLASPHHQQDSRLAATVSHNFSHDPLRVLETESLTTQGHDAVISDADHSLQQDRYRNPLFSSPLSDTPKDSAMDQAFIDLPQISTFLNGKQAGGKPEGLNNQMEQHHVAITPLMRGFDAQLPIRNSQEAHDFLEEAGKTLKATIEGLLALQRSQHGLRDKHLRPIEDNPLRLNMDYDTTLNLMFADQKSPVHLSAPAAVAESLDNLRLHHQANQQAITQALNTMLEAFSPERLLTRFTHYLRSNERQEQDSAWAWDMYKNYYNELASSRQQGFEKLFGEVYEQAYDRALRQGMKDSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9530 - -


  Protein sequence: 439 a.a.    

>T6CP011646 NC_010465:425107-426423 [Yersinia pseudotuberculosis YPIII] [FHA]
MDKKQPTLSLRVVNSDKLESGKQASSLFHAQGGSVGSDGSHHWSIQDQGGNISPSQFAIEWRDGSFCLRLLNGSLNINHS
MLTPNSGFVRLQQGDEMTLGNLVIKSHISRSAADMIDPLMVSPESLVSSYSNPMDAMMEGEPLASPHHQQDSRLAATVSH
NFSHDPLRVLETESLTTQGHDAVISDADHSLQQDRYRNPLFSSPLSDTPKDSAMDQAFIDLPQISTFLNGKQAGGKPEGL
NNQMEQHHVAITPLMRGFDAQLPIRNSQEAHDFLEEAGKTLKATIEGLLALQRSQHGLRDKHLRPIEDNPLRLNMDYDTT
LNLMFADQKSPVHLSAPAAVAESLDNLRLHHQANQQAITQALNTMLEAFSPERLLTRFTHYLRSNERQEQDSAWAWDMYK
NYYNELASSRQQGFEKLFGEVYEQAYDRALRQGMKDSE*

  Nucleotide sequence: 1317 bp    

>T6CP011646 NC_010465:425107-426423 [Yersinia pseudotuberculosis YPIII] [FHA]
ATGGATAAAAAACAACCAACGCTGTCATTGCGGGTCGTCAACAGCGATAAATTAGAGAGTGGCAAACAAGCCAGCAGCCT
GTTTCATGCGCAAGGGGGCAGTGTCGGCAGTGACGGTAGCCATCATTGGTCGATTCAGGACCAAGGCGGCAATATCAGCC
CGTCACAGTTTGCTATCGAATGGCGTGATGGCTCTTTCTGCCTGCGGTTGCTGAATGGCTCTCTGAACATTAATCATTCG
ATGCTAACACCCAATTCGGGTTTCGTTCGCCTACAGCAAGGGGATGAAATGACGTTGGGTAATCTGGTGATCAAAAGCCA
TATCAGCCGTTCTGCTGCCGATATGATCGATCCACTGATGGTGTCACCAGAGTCACTGGTATCGAGTTACAGCAACCCGA
TGGATGCCATGATGGAGGGGGAGCCGTTGGCCTCGCCTCATCATCAGCAAGACAGCCGGTTAGCCGCGACGGTTAGCCAT
AATTTCAGCCATGATCCATTACGGGTATTGGAAACGGAAAGCCTGACTACGCAAGGCCATGACGCCGTGATATCTGATGC
TGATCACTCTCTACAGCAGGACCGATACCGTAACCCACTTTTCTCTTCCCCGCTCTCTGATACCCCCAAGGACAGTGCTA
TGGATCAGGCGTTTATCGATCTCCCGCAGATCAGTACCTTTCTTAACGGTAAACAAGCGGGGGGCAAACCAGAAGGACTC
AATAACCAAATGGAACAACATCACGTTGCCATTACGCCGCTGATGCGTGGTTTTGACGCTCAACTCCCGATCCGCAACAG
CCAGGAAGCTCACGATTTCCTTGAAGAGGCGGGTAAAACACTCAAAGCGACAATCGAAGGTCTGCTCGCCTTACAACGCA
GCCAACATGGCTTGCGTGATAAGCACTTACGGCCGATTGAAGATAATCCATTGCGTCTGAATATGGATTACGACACCACC
CTCAACTTGATGTTTGCCGATCAAAAAAGCCCGGTTCATCTTTCAGCGCCCGCCGCCGTGGCCGAAAGCCTGGATAACCT
GCGTTTGCATCATCAGGCCAATCAACAGGCGATTACGCAAGCCTTGAACACCATGTTGGAAGCCTTCTCCCCTGAGCGTT
TACTGACGCGTTTTACCCATTATTTGCGCAGTAATGAGCGGCAAGAGCAGGACTCCGCCTGGGCGTGGGATATGTACAAA
AACTACTATAACGAGCTGGCCTCCAGCCGCCAGCAAGGTTTTGAAAAACTGTTTGGCGAAGTGTATGAGCAAGCCTATGA
CCGGGCCTTACGTCAAGGCATGAAGGATAGCGAGTAA