Detailed information of component protein


Summary

Component ID T6CP011631
Component protein type TagL
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (560 a.a.); Nucleotide sequence (1680 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SARI_RS12275
Coordinate (Strand) 2553071..2554750 (-)
NCBI ID WP_001254769.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 3.2e-17 428..524
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 560 a.a.    

>T6CP011631 NC_010067:c2554750-2553071 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TagL]
MRRSVIIPVVLHSLVAVATLLWLLWYFIPTGNVFNGMTTLLILLLAGWYVFKNCRNEEPTSDVTLPAAELPLLDTRGPVV
LVCGDGLDALFQEGPLRKTAQGWWLRAGDVNRLTDVVRSIQTQFPRQVGQLSVMYRCLPDHHQDEAVLRSALKTLRQQCK
QIQSLTGFTLPVVLSAEFSGPETPWIIVRGDKPIVCPVNDSPQAFIDWQQAEDNILALPAVSEAFSFIRNTLADELEKTD
RLTPPVCAFSVAMRLGTVLPCTESVWAGWLYTRTCLQFSRKPGQSAPASLFPDAVLPLLAPFASTVQGGQRTRRLILLMW
LCALTALGISALNNRDLIRQVSTDLQRWNAIPMDHYRPKAESLAALKQDALLLERWQRQGEPLRYSLGYYPGQRLWLALQ
QAIDTWTPPPAPEPKPVPKIVRLDSMSLFDSGKSVLKPGSTKMLVNSLLGIKARPGWLIVVSGHTDNTGSVQLNQTLSLQ
RAEAVRNWMRDTGDVPESCFAVQGYGDSRPIASNDTPDGRAHNRRVEISLVPQADACRLPGAKHASQDVRDVSTQEMEK*

  Nucleotide sequence: 1680 bp    

>T6CP011631 NC_010067:c2554750-2553071 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TagL]
ATGCGTAGATCAGTCATCATTCCGGTTGTCCTGCACTCCCTGGTAGCCGTTGCCACGTTGCTGTGGTTGCTGTGGTATTT
CATCCCGACGGGCAACGTTTTTAACGGCATGACCACTCTGCTGATCCTCCTTCTGGCAGGCTGGTATGTTTTTAAAAACT
GTCGGAACGAAGAGCCCACATCCGACGTTACCCTCCCGGCTGCTGAACTGCCATTACTCGACACCCGGGGCCCCGTTGTA
CTGGTGTGTGGTGACGGGCTGGATGCGCTGTTTCAGGAAGGTCCTCTTCGTAAAACAGCCCAGGGATGGTGGCTGCGGGC
CGGTGACGTCAACCGGTTAACTGACGTTGTCCGCAGTATCCAGACGCAGTTCCCGCGCCAGGTCGGTCAGCTCTCGGTGA
TGTACCGCTGCCTGCCAGACCATCATCAGGATGAAGCCGTTCTTCGTTCCGCACTGAAAACGCTCCGCCAGCAGTGTAAG
CAGATTCAATCCCTGACGGGTTTCACACTGCCGGTTGTGTTGAGTGCAGAATTTTCCGGGCCTGAAACGCCGTGGATAAT
TGTTCGGGGTGATAAGCCGATCGTCTGTCCGGTTAATGATTCGCCTCAGGCATTTATTGACTGGCAGCAGGCGGAAGACA
ATATCCTGGCACTGCCAGCCGTCAGCGAGGCATTTTCCTTTATCCGTAATACGCTGGCTGATGAACTGGAGAAAACTGAC
CGGTTAACGCCGCCTGTGTGTGCATTTTCCGTTGCAATGCGCCTCGGTACCGTCCTTCCCTGTACAGAGTCAGTCTGGGC
CGGTTGGCTATATACCCGCACCTGTTTGCAGTTTTCCCGAAAACCAGGGCAGTCAGCCCCGGCAAGTTTGTTTCCGGATG
CGGTTCTGCCGCTGCTGGCACCTTTTGCATCAACTGTGCAGGGGGGCCAGCGTACCCGTCGCCTGATCCTGCTGATGTGG
TTATGTGCCCTGACCGCATTGGGTATTTCTGCGCTCAATAACCGTGACCTGATCCGTCAGGTGAGTACCGATTTACAGCG
CTGGAATGCAATCCCGATGGACCACTATCGCCCTAAGGCAGAATCACTGGCCGCCCTGAAGCAGGATGCGCTCCTGCTTG
AACGCTGGCAGCGCCAGGGGGAGCCTTTGCGTTACAGTCTGGGCTATTACCCGGGCCAACGACTGTGGCTGGCCTTGCAA
CAGGCTATCGATACCTGGACGCCTCCACCAGCACCTGAACCAAAACCGGTACCGAAAATTGTTCGTCTCGACAGCATGTC
GCTGTTTGATTCCGGTAAGTCCGTGCTGAAACCGGGCTCCACCAAAATGCTGGTCAACTCGCTGCTCGGAATCAAAGCCA
GACCAGGCTGGCTCATCGTGGTCAGCGGCCACACAGACAATACCGGCAGCGTTCAGCTCAACCAGACCCTGTCTTTACAA
CGAGCTGAGGCTGTTCGTAACTGGATGCGTGATACCGGGGACGTACCGGAAAGTTGCTTTGCCGTGCAGGGTTACGGTGA
CAGCCGACCGATTGCATCAAACGACACGCCTGATGGCCGTGCGCATAACCGGCGTGTCGAGATCAGTCTGGTACCGCAGG
CTGACGCCTGCCGTCTGCCAGGCGCAAAACACGCGTCACAGGATGTACGTGACGTTTCAACTCAAGAAATGGAGAAGTAA