Detailed information of component protein
Summary
Component ID | T6CP011630 |
Component protein type | PAAR |
T6SS ID (Type) | T6SS00237 (Type i2) |
Strain | Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980 |
Replicon | chromosome |
Sequence | Protein sequence (88 a.a.); Nucleotide sequence (264 bp) |
Reference |
External database links
Locus tag (Gene) | SARI_RS12245 |
Coordinate (Strand) | 2543015..2543278 (-) |
NCBI ID | WP_012210483.1 |
RefSeq | NC_010067 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
PAAR_motif | PF05488.15 | 4.1e-25 | 7..79 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
- | - |
Protein sequence: 88 a.a.
>T6CP011630 NC_010067:c2543278-2543015 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [PAAR]
MLQIIRKGDKTTHGGSVMTGSATMIFGGVGVARKGDMVSCPIPGHGPTTIIEGNPDYLDNGIPVAFHGHKCGCGCTLISS
FVQAKVA*
MLQIIRKGDKTTHGGSVMTGSATMIFGGVGVARKGDMVSCPIPGHGPTTIIEGNPDYLDNGIPVAFHGHKCGCGCTLISS
FVQAKVA*
Nucleotide sequence: 264 bp
>T6CP011630 NC_010067:c2543278-2543015 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [PAAR]
ATGCTCCAGATTATCCGAAAAGGCGATAAAACCACTCACGGTGGTTCAGTCATGACCGGTTCTGCCACAATGATATTTGG
CGGGGTTGGTGTGGCGCGTAAAGGGGACATGGTTTCGTGCCCAATACCAGGTCATGGTCCGACAACCATCATCGAAGGCA
ATCCCGATTATCTTGATAACGGGATCCCGGTAGCCTTTCACGGCCACAAGTGCGGTTGTGGCTGCACACTAATCAGTTCT
TTTGTACAAGCGAAGGTTGCCTGA
ATGCTCCAGATTATCCGAAAAGGCGATAAAACCACTCACGGTGGTTCAGTCATGACCGGTTCTGCCACAATGATATTTGG
CGGGGTTGGTGTGGCGCGTAAAGGGGACATGGTTTCGTGCCCAATACCAGGTCATGGTCCGACAACCATCATCGAAGGCA
ATCCCGATTATCTTGATAACGGGATCCCGGTAGCCTTTCACGGCCACAAGTGCGGTTGTGGCTGCACACTAATCAGTTCT
TTTGTACAAGCGAAGGTTGCCTGA