Detailed information of component protein
Summary
| Component ID | T6CP011612 |
| Component protein type | PAAR |
| T6SS ID (Type) | T6SS00225  (Type i3) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (122 a.a.); Nucleotide sequence (366 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS18455 |
| Coordinate (Strand) | 3857702..3858067 (-) |
| NCBI ID | WP_002214737.1 |
| RefSeq | NC_009708 |
| Uniprot ID | A0A0E8XF65_9GAMM, Q66EP0_YERPS, A0A0U1QYL1_YERP3, A0A0E1NP63_YERPA, A0A0H2YEM5_YERPN, A0A0H3B7J9_YERPY, A0A0H2W9K2_YERPE, A0A0T9JBX5_YERPU |
| KEGG ID | ypu:BZ21_4034, yps:YPTB0652, ype:YPO0511a, ypo:BZ17_1905, ypi:YpsIP31758_3425, ypc:BZ23_128, ypq:DJ40_1717, ypr:BZ20_1443, ypa:YPA_3584, ypn:YPN_0386, ypy:YPK_3554 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DUF4150 | PF13665.8 | 1.2e-11 | 19..106 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-121 | MTAANTRAGGISFIGSDPMIPISAPNTAPNANGIPNVSNYFCCGGNEQNLNTIRPATIDGGSVMGAASGTHSAKMDPMQGSGKYFIQGSPATRLGDMSMTNNYNAPSTQIAPSQTKYFVNA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.5993 | - | - |
Protein sequence: 122 a.a.
>T6CP011612 NC_009708:c3858067-3857702 [Yersinia pseudotuberculosis IP 31758] [PAAR]
MTAANTRAGGISFIGSDPMIPISAPNTAPNANGIPNVSNYFCCGGNEQNLNTIRPATIDGGSVMGAASGTHSAKMDPMQG
SGKYFIQGSPATRLGDMSMTNNYNAPSTQIAPSQTKYFVNA*
MTAANTRAGGISFIGSDPMIPISAPNTAPNANGIPNVSNYFCCGGNEQNLNTIRPATIDGGSVMGAASGTHSAKMDPMQG
SGKYFIQGSPATRLGDMSMTNNYNAPSTQIAPSQTKYFVNA*
Nucleotide sequence: 366 bp
>T6CP011612 NC_009708:c3858067-3857702 [Yersinia pseudotuberculosis IP 31758] [PAAR]
ATGACAGCAGCCAATACTCGCGCAGGTGGGATCAGCTTTATCGGCAGTGACCCGATGATCCCGATATCTGCTCCCAACAC
CGCGCCCAACGCCAATGGTATTCCTAATGTCAGCAACTATTTTTGCTGTGGGGGTAACGAACAGAATCTCAACACCATCC
GTCCAGCCACGATAGACGGCGGATCTGTGATGGGGGCGGCCTCGGGGACACATTCGGCCAAGATGGACCCTATGCAGGGA
TCAGGAAAGTATTTCATTCAGGGAAGCCCAGCAACACGTTTAGGAGATATGAGTATGACCAATAATTACAACGCGCCTTC
GACGCAAATTGCGCCCAGCCAGACCAAGTATTTTGTCAATGCGTAG
ATGACAGCAGCCAATACTCGCGCAGGTGGGATCAGCTTTATCGGCAGTGACCCGATGATCCCGATATCTGCTCCCAACAC
CGCGCCCAACGCCAATGGTATTCCTAATGTCAGCAACTATTTTTGCTGTGGGGGTAACGAACAGAATCTCAACACCATCC
GTCCAGCCACGATAGACGGCGGATCTGTGATGGGGGCGGCCTCGGGGACACATTCGGCCAAGATGGACCCTATGCAGGGA
TCAGGAAAGTATTTCATTCAGGGAAGCCCAGCAACACGTTTAGGAGATATGAGTATGACCAATAATTACAACGCGCCTTC
GACGCAAATTGCGCCCAGCCAGACCAAGTATTTTGTCAATGCGTAG