SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP011599
Component protein type	FHA
T6SS ID (Type)	T6SS00216 (Type i1)
Strain	Marinomonas sp. MWYL1
Replicon	chromosome
Sequence	Protein sequence (504 a.a.); Nucleotide sequence (1512 bp)
Reference	[1] Bernard CS, Brunet YR, Gavioli M, et al. Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins. J Bacteriol. 2011 May;193(9):2158-67. doi: 10.1128/JB.00029-11. Epub 2011 Mar 4. PMID: 21378190

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	MMWYL1_RS06090
Coordinate (Strand)	1341947..1343458 (+)
NCBI ID	WP_012068916.1
RefSeq	NC_009654
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
FHA	PF00498.28	2.5e-06	35..102

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 504 a.a.

						>T6CP011599 NC_009654:1341947-1343458 [Marinomonas sp. MWYL1] [FHA]
MDNITQRVANFIVTNVRSLEAGLLAKMSFEDNGGVIGSALDADWHLKDRSQLIKPFHCEIVLVDDSFCVKDLCGETYVNS
SSMPLGVNKLARLNDEDEIKIGEYEIRVFLNRESELKETSHSLEQFFFTKSNSLIDGSDNEKFDHDIDLEDICENVKELD
PIVMLDSNKSLVDEENLIDEAPLVEVAEDFINSEFKYNSKISPKFTVQADTDNDITAAFGLNDIRRGGSLIEKESKTTKL
KKFFSKSIFSSEKEEEKENGKQVMETQPMDDNVLDLLEQEVAKSYTKEDTVKSSSQYKATYDNSSFENNHVLGGPLMSGL
EVSIGSNSSVEEMQALSAEIGSTLRACVQGLLDLHSQVKDSRYGMMHRSLQPIEDNPLKLGLSYEETIRTMFDENKSAVH
LSATSSVEESLKMIRIHNEAVQYATNIALGEILQALSPDALLKRFSRYNRDQKNSQDEKSWAWGMYENYYKELTSNRQQG
FEKLFWEIFEQSYDKKLREKHAE*					

Nucleotide sequence: 1512 bp

						>T6CP011599 NC_009654:1341947-1343458 [Marinomonas sp. MWYL1] [FHA]
ATGGATAACATCACACAACGAGTCGCTAATTTTATTGTTACGAATGTACGGTCTCTTGAGGCTGGACTGTTGGCGAAAAT
GTCTTTTGAAGATAACGGTGGGGTTATAGGTTCTGCTTTAGATGCAGATTGGCACCTTAAAGACCGTAGTCAATTAATTA
AACCTTTTCATTGTGAAATTGTTTTGGTGGATGACTCTTTTTGCGTAAAAGACTTATGTGGCGAAACCTATGTTAATTCA
TCCAGCATGCCTTTAGGTGTTAATAAATTAGCTCGGCTCAATGATGAAGATGAAATCAAGATTGGTGAGTATGAGATACG
AGTTTTTTTGAATAGAGAATCAGAGTTAAAAGAAACCAGTCACTCACTTGAACAGTTTTTTTTTACTAAAAGTAATAGCT
TGATTGATGGAAGTGATAATGAAAAATTTGATCATGATATTGATCTTGAAGATATTTGTGAAAATGTTAAAGAGCTAGAT
CCTATTGTTATGCTTGATAGTAATAAAAGCTTAGTTGATGAAGAGAATTTAATTGATGAAGCGCCTTTGGTCGAAGTGGC
TGAAGACTTTATTAATAGCGAATTTAAATACAATAGTAAAATATCACCAAAGTTTACTGTGCAGGCAGATACGGATAATG
ATATCACCGCTGCTTTTGGTTTAAATGATATACGACGTGGTGGCTCCTTAATAGAAAAGGAAAGTAAAACTACGAAACTG
AAGAAATTTTTTTCTAAATCTATTTTTTCTAGTGAAAAAGAGGAAGAGAAAGAAAACGGCAAACAAGTAATGGAGACCCA
GCCAATGGACGATAATGTTTTAGACCTGCTTGAGCAGGAAGTAGCAAAGTCTTATACAAAAGAAGATACGGTAAAGTCGA
GCTCTCAATACAAAGCAACCTATGATAATAGCTCCTTTGAGAATAATCATGTGCTTGGTGGGCCTTTAATGTCTGGGCTG
GAGGTATCGATTGGAAGTAACTCTAGTGTAGAAGAAATGCAAGCATTATCGGCAGAGATAGGAAGCACCTTGCGTGCTTG
CGTTCAAGGCTTGTTAGATTTGCATTCCCAAGTGAAAGACAGTCGCTATGGCATGATGCACAGAAGCCTTCAGCCTATTG
AAGATAACCCACTTAAGCTTGGCCTTTCCTACGAAGAAACGATTCGAACCATGTTCGATGAAAACAAAAGTGCAGTGCAT
CTTTCAGCTACATCTTCCGTTGAAGAAAGCCTGAAGATGATAAGAATTCATAATGAAGCAGTGCAATATGCAACCAATAT
CGCACTTGGTGAGATTTTGCAGGCTTTATCTCCAGACGCATTATTAAAGCGCTTTAGTCGTTATAACCGAGACCAAAAAA
ATAGTCAGGATGAAAAGTCTTGGGCATGGGGAATGTACGAGAATTATTACAAGGAATTAACTTCAAATCGCCAGCAAGGG
TTTGAGAAACTATTTTGGGAAATATTCGAGCAGTCTTATGATAAAAAATTGCGTGAGAAACATGCAGAGTAG					