Detailed information of component protein


Summary

Component ID T6CP011591
Component protein type PAAR
T6SS ID (Type) T6SS00208 insolico (Type i1)
Strain Vibrio cholerae O395
Replicon chromosome I
Sequence Protein sequence (95 a.a.); Nucleotide sequence (285 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC0395_RS00170
Coordinate (Strand) 37262..37546 (-)
NCBI ID WP_000526403.1
RefSeq NC_009456
Uniprot ID A0A366AD93_9VIBR, A0A366ATG9_9VIBR, Q9KN60_VIBCH, A0A0X1L1U8_VIBCO, A0A0H3AD95_VIBC3, A0A0K9UV59_VIBCL, A0A0H3Q6K2_VIBCL, A0A2V4NAH1_VIBCL
KEGG ID vcq:EN18_04250, vch:VCA0105, vco:VC0395_0034
PDB ID 4JIV
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 3e-18 19..85
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 95 a.a.    

>T6CP011591 NC_009456:c37546-37262 [Vibrio cholerae O395] [PAAR]
MGNGIVVGHLGTDHDGFPPTPVTAGSATVRYDGIPAARLGDPLAPHDKPKHPSHGRAIAAGSGTVMIDGKPAARVGDAVD
CGGVLQGASSVNIG*

  Nucleotide sequence: 285 bp    

>T6CP011591 NC_009456:c37546-37262 [Vibrio cholerae O395] [PAAR]
ATGGGTAACGGAATCGTAGTAGGGCATTTAGGTACAGATCATGATGGTTTCCCGCCAACGCCAGTGACCGCAGGCTCAGC
AACTGTGCGTTATGATGGGATTCCAGCTGCTCGGCTTGGGGACCCCTTGGCCCCTCACGATAAACCAAAGCATCCCTCGC
ATGGCCGAGCGATTGCTGCGGGTTCTGGGACGGTGATGATTGATGGAAAACCCGCAGCAAGGGTTGGAGATGCGGTCGAT
TGTGGTGGCGTATTACAGGGAGCAAGCAGTGTCAACATTGGTTAA