Detailed information of component protein


Summary

Component ID T6CP011590
Component protein type FHA
T6SS ID (Type) T6SS00208 insolico (Type i1)
Strain Vibrio cholerae O395
Replicon chromosome I
Sequence Protein sequence (496 a.a.); Nucleotide sequence (1488 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) VC0395_RS00135
Coordinate (Strand) 29143..30630 (-)
NCBI ID WP_001089706.1
RefSeq NC_009456
Uniprot ID A0A0H3AG71_VIBC3, A0A023PRJ4_VIBCL
KEGG ID vco:VC0395_0026
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 2.8e-05 35..102

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 496 a.a.    

>T6CP011590 NC_009456:c30630-29143 [Vibrio cholerae O395] [FHA]
MNSVTLPSLTLLVTNAQHLESGLSAQHTWTSSGGVIGSSPNAQWRLVDAQGSVKPMHCEVMMVDGAYCLKDSCGSTYVNG
ADMPLGVGQMARLTHKDEVSVGPYRLRVLFGNAIEVEEQYGSLDALFASKDEDLLADLTLDIEPEKHELPTNTDPLQALD
NLMGAAGSSTSLLDDPKSEQPLSAQPSLVPQDNLVLQNADFTPQADSEYEMTSSIRLKKILGFAKATFAKQTKSEAPNVT
SATPTISQYKTSESNVSEGFTMDEKVLDLLEEEVAKSFQPQLEKSAYSTMHTSSTSQANHLVTGPILEGLGVDLSDENDM
NRMHLLSQELGESLQACVRGLLDLHQQVSESRFGTLNRNLQPIEDNPLRLGLSYEKTIRTLYDADKSVVHLSAPAAIAES
LKTVRDHNEAMQFATSEALSQILNAFSPQVMLRRFHHYKRNSDTTQTSTDAWAWNMYCSYYQELTSNRQRGFEKLFWEIF
EQAYDRKIREKQLEL*

  Nucleotide sequence: 1488 bp    

>T6CP011590 NC_009456:c30630-29143 [Vibrio cholerae O395] [FHA]
ATGAACTCAGTGACATTACCTTCGTTGACCCTATTAGTCACCAATGCTCAGCACTTAGAGTCTGGCTTGTCCGCTCAGCA
TACGTGGACCTCGTCAGGTGGGGTGATCGGCTCATCGCCGAATGCGCAGTGGCGTTTGGTCGATGCGCAAGGCAGTGTAA
AACCCATGCACTGTGAAGTGATGATGGTAGACGGGGCGTATTGTTTAAAAGACAGCTGCGGCAGCACGTATGTCAACGGG
GCAGACATGCCACTGGGCGTTGGGCAAATGGCACGTCTGACTCACAAAGATGAAGTGAGTGTGGGGCCTTACCGTTTGCG
AGTGCTGTTTGGTAACGCCATCGAAGTGGAAGAACAATATGGATCTTTAGATGCGCTGTTTGCCTCTAAGGATGAGGATC
TGCTAGCGGATTTGACGCTCGACATCGAACCAGAAAAACACGAATTACCAACCAATACAGACCCATTACAGGCGCTCGAT
AACCTGATGGGTGCGGCGGGCAGTTCGACCTCCTTACTGGATGATCCTAAAAGTGAGCAGCCGTTATCCGCCCAACCTAG
CCTCGTGCCACAAGATAACTTAGTGCTGCAAAATGCCGATTTTACGCCACAAGCGGACAGTGAGTATGAGATGACCTCAT
CGATCCGCCTTAAGAAAATTCTTGGTTTTGCGAAGGCCACCTTTGCTAAGCAAACCAAATCAGAAGCACCGAACGTGACT
TCTGCCACCCCCACAATTTCTCAATATAAAACCAGCGAAAGCAACGTATCAGAGGGCTTCACAATGGATGAAAAAGTACT
GGATTTGTTAGAAGAGGAAGTCGCGAAAAGTTTCCAACCGCAGTTGGAGAAAAGCGCGTATTCCACTATGCACACAAGCT
CAACCAGCCAAGCTAACCACTTGGTGACAGGTCCGATCTTGGAAGGGCTCGGCGTAGACCTGAGTGATGAAAATGATATG
AATCGTATGCATCTTTTATCGCAAGAGCTGGGTGAGTCTTTGCAAGCTTGTGTGCGCGGTTTACTCGATTTGCATCAACA
AGTGAGTGAAAGCCGTTTCGGTACTTTGAACCGTAATCTGCAACCCATTGAAGATAACCCGCTGCGTTTAGGCCTCTCCT
ATGAAAAGACGATCCGCACTCTGTACGATGCTGATAAGAGCGTCGTGCACCTTTCTGCCCCTGCGGCGATTGCTGAAAGC
CTAAAAACCGTTCGCGATCATAATGAAGCGATGCAGTTCGCCACGTCAGAAGCCTTGAGCCAAATTCTCAACGCTTTCTC
ACCACAGGTGATGCTGCGCCGTTTCCACCACTACAAGCGCAATTCTGATACCACACAAACTTCCACGGATGCTTGGGCGT
GGAATATGTACTGCAGCTACTACCAAGAGCTGACCTCTAACCGCCAACGCGGCTTTGAGAAGTTGTTTTGGGAGATCTTT
GAGCAAGCCTACGATCGCAAAATTCGCGAGAAGCAACTGGAGCTATAA