Detailed information of component protein


Summary

Component ID T6CP011468
Component protein type FHA
T6SS ID (Type) T6SS00076 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (479 a.a.); Nucleotide sequence (1437 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS30320
Coordinate (Strand) 2855558..2856994 (+)
NCBI ID WP_004555176.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 3.5e-09 29..96
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-478 MQLTVIEHAGEPVGTDGRNAVVFHAPGGTIGRDSDNHLVLRDDTRQISRLQALLQVADDACLLKNLSSVSTIEVNRVPIGYAQAQRLNMGDIIRIGPYLLRAEPDDATIERTVEAAATGAAAAAPAASAAQAQAKGAGNKLWGLLHERFGLGKAQGAGEQSGARAAPARHRDSPASAAPRDLNQLSTDPLDLFAQPHGDPDARAGAAREGEDRAPPTVTQPDHAPEWTQHVRVQPAQSAPPAASRPGAPAARSGDIPGADDASDMPSRVRASPAPAPATPETLLQAFFEGAGLDTAAEQHHWSAEQLFVAGQLLALFANGTVELLSSRSILKREVKADMTMLLDRENNPLKLLPDGSAVLRQMFGLPLPGFMTPQSAVSDAFQDLHAHQIGMVAGMRAALMDLLTRFSPQRLRERDAAPQWYEKRVPALYKARLWDRYAATHRDTLFAIEDDFASVFGKAFLSAYDAEVESYRGRCRR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9905 - -


  Protein sequence: 479 a.a.    

>T6CP011468 NC_006351:2855558-2856994 [Burkholderia pseudomallei K96243] [FHA]
MQLTVIEHAGEPVGTDGRNAVVFHAPGGTIGRDSDNHLVLRDDTRQISRLQALLQVADDACLLKNLSSVSTIEVNRVPIG
YAQAQRLNMGDIIRIGPYLLRAEPDDATIERTVEAAATGAAAAAPAASAAQAQAKGAGNKLWGLLHERFGLGKAQGAGEQ
SGARAAPARHRDSPASAAPRDLNQLSTDPLDLFAQPHGDPDARAGAAREGEDRAPPTVTQPDHAPEWTQHVRVQPAQSAP
PAASRPGAPAARSGDIPGADDASDMPSRVRASPAPAPATPETLLQAFFEGAGLDTAAEQHHWSAEQLFVAGQLLALFANG
TVELLSSRSILKREVKADMTMLLDRENNPLKLLPDGSAVLRQMFGLPLPGFMTPQSAVSDAFQDLHAHQIGMVAGMRAAL
MDLLTRFSPQRLRERDAAPQWYEKRVPALYKARLWDRYAATHRDTLFAIEDDFASVFGKAFLSAYDAEVESYRGRCRR*

  Nucleotide sequence: 1437 bp    

>T6CP011468 NC_006351:2855558-2856994 [Burkholderia pseudomallei K96243] [FHA]
ATGCAACTGACCGTTATCGAACACGCGGGCGAGCCGGTCGGCACCGACGGCCGCAACGCCGTCGTGTTTCATGCGCCGGG
CGGCACCATCGGCCGGGACAGCGACAATCACCTCGTGCTGCGCGACGACACCCGGCAAATCTCGCGCCTGCAGGCGCTGC
TGCAGGTGGCCGACGACGCGTGCCTGCTGAAGAACCTGAGCAGCGTATCGACGATCGAAGTGAACCGCGTGCCGATCGGC
TACGCGCAGGCGCAGCGCCTGAACATGGGCGACATCATCCGGATCGGCCCTTACCTGCTGCGCGCGGAGCCCGACGACGC
GACGATCGAGCGAACCGTCGAAGCCGCCGCCACGGGGGCCGCGGCGGCGGCGCCGGCGGCGTCCGCCGCGCAGGCTCAGG
CGAAGGGGGCGGGCAACAAACTGTGGGGCCTGTTGCACGAGCGCTTCGGGCTCGGCAAGGCACAGGGCGCGGGCGAGCAG
TCCGGCGCGCGCGCCGCGCCGGCGCGCCACCGCGATTCGCCGGCGTCCGCCGCGCCGCGCGACCTGAATCAGCTGTCGAC
CGATCCGCTCGACCTGTTCGCGCAGCCGCACGGCGATCCGGATGCGCGAGCCGGCGCCGCGCGCGAAGGCGAAGACCGCG
CGCCGCCCACCGTCACGCAACCGGATCACGCGCCCGAGTGGACGCAACACGTCCGCGTGCAGCCGGCACAATCCGCGCCG
CCCGCCGCCTCTCGCCCCGGCGCGCCCGCCGCGCGTTCGGGCGATATCCCCGGAGCGGACGATGCGAGCGACATGCCGTC
GCGCGTGCGCGCGTCGCCGGCCCCCGCGCCGGCGACACCCGAGACATTGCTGCAGGCGTTCTTCGAAGGCGCGGGGCTCG
ACACCGCCGCCGAGCAGCATCACTGGTCCGCCGAGCAGTTGTTCGTCGCGGGGCAACTGCTCGCGCTGTTCGCCAACGGC
ACGGTCGAGCTGCTGTCGTCACGCAGCATCCTGAAGCGCGAAGTGAAGGCCGACATGACGATGCTGCTCGACCGCGAGAA
CAATCCGCTGAAGCTGCTGCCGGACGGCAGCGCGGTGCTGCGCCAGATGTTCGGGCTGCCGCTGCCGGGCTTCATGACAC
CGCAAAGCGCCGTGTCCGACGCGTTCCAGGATCTGCACGCGCACCAGATCGGCATGGTGGCCGGCATGCGCGCCGCGCTG
ATGGATCTGCTCACGCGCTTCTCGCCGCAGCGCCTGCGCGAGCGCGACGCCGCGCCCCAGTGGTACGAGAAGCGCGTGCC
GGCGCTGTACAAGGCGCGCCTCTGGGACCGCTATGCAGCCACGCATCGCGACACGCTGTTCGCGATCGAGGACGATTTCG
CCTCCGTGTTCGGCAAGGCGTTCCTCAGCGCCTACGACGCGGAAGTCGAGAGCTATCGCGGACGCTGCCGCCGGTGA