Detailed information of component protein


Summary

Component ID T6CP011440
Component protein type FHA
T6SS ID (Type) T6SS00050 experimental (Type i1)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (429 a.a.); Nucleotide sequence (1287 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS01785
Coordinate (Strand) 394200..395486 (-)
NCBI ID WP_011144756.1
RefSeq NC_005126
Uniprot ID A0A6L9JNW6_PHOLM, Q7N9G9_PHOLL
KEGG ID plum:A4R40_01790, plu:plu0367
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-428 MEKQQPTLSLRVINSDQLESGKAASCLFSTQGGTVGSSESHLWSVQDQQGNINPSQFTIQWRDDAFCLQMIAGPLFVNQSPLTSGAGFIRLQQADEITIGKLVIKSYISFSDTDRIDPMTVSPESLVSSYSNPLDAMMEKDPAQDSAFTDHGSLAPTIKHDFSHDPLKVLDSENLTTLDQTSVSNEVDQSLQQDHYRTPLFFSSLSDNRGNAMDQDFVDLPGISSPFNEQYQDMEQQHVAITPLMRGLNTQLPLHNSQQANDFLEEMGKTMKAAIEGLLVLQRTQHGLRDKQLRPIEDNPLRLNMDYNTTMQVMFADQKSPVHLSAPSAVAESLHNLQLHYQANRIAITAALNTMLDAFSPEHLLNRFAQYRRSNETQEKDATWAWEMYTSYYRELASSRQQGFEKLFGEVYEQAYDRALRQGLEDSQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9423 - -


  Protein sequence: 429 a.a.    

>T6CP011440 NC_005126:c395486-394200 [Photorhabdus laumondii subsp. laumondii TTO1] [FHA]
MEKQQPTLSLRVINSDQLESGKAASCLFSTQGGTVGSSESHLWSVQDQQGNINPSQFTIQWRDDAFCLQMIAGPLFVNQS
PLTSGAGFIRLQQADEITIGKLVIKSYISFSDTDRIDPMTVSPESLVSSYSNPLDAMMEKDPAQDSAFTDHGSLAPTIKH
DFSHDPLKVLDSENLTTLDQTSVSNEVDQSLQQDHYRTPLFFSSLSDNRGNAMDQDFVDLPGISSPFNEQYQDMEQQHVA
ITPLMRGLNTQLPLHNSQQANDFLEEMGKTMKAAIEGLLVLQRTQHGLRDKQLRPIEDNPLRLNMDYNTTMQVMFADQKS
PVHLSAPSAVAESLHNLQLHYQANRIAITAALNTMLDAFSPEHLLNRFAQYRRSNETQEKDATWAWEMYTSYYRELASSR
QQGFEKLFGEVYEQAYDRALRQGLEDSQ*

  Nucleotide sequence: 1287 bp    

>T6CP011440 NC_005126:c395486-394200 [Photorhabdus laumondii subsp. laumondii TTO1] [FHA]
ATGGAAAAACAACAGCCAACTCTCTCATTACGAGTGATCAACAGCGATCAATTGGAAAGCGGCAAAGCGGCTAGCTGCCT
ATTCTCGACTCAAGGTGGCACAGTCGGCAGCAGTGAAAGCCATCTTTGGTCCGTTCAAGATCAACAAGGTAATATCAATC
CATCACAATTTACTATCCAGTGGCGTGATGACGCATTTTGCTTACAAATGATTGCGGGTCCCCTGTTTGTGAATCAGTCA
CCCTTGACTTCTGGCGCCGGTTTCATCCGCCTGCAACAAGCGGATGAAATTACCATTGGTAAACTGGTGATCAAAAGCTA
TATCAGTTTTTCCGACACAGATCGTATTGATCCAATGACAGTATCACCGGAATCACTGGTCTCCAGCTATAGCAATCCAC
TGGACGCTATGATGGAAAAAGATCCTGCTCAAGATTCCGCTTTCACTGATCATGGTTCTTTGGCCCCCACGATCAAACAC
GATTTCAGCCATGATCCACTCAAGGTTCTCGATAGCGAAAATCTGACCACTCTGGACCAGACGTCAGTGAGTAACGAGGT
AGACCAAAGCCTGCAACAAGACCACTACCGCACCCCATTATTTTTCTCTTCCCTCTCAGATAACAGAGGCAATGCTATGG
ATCAGGATTTTGTTGATTTACCCGGTATCTCTTCGCCTTTTAATGAACAGTATCAGGACATGGAACAGCAACATGTTGCT
ATCACGCCATTGATGCGAGGGTTGAACACACAATTGCCTTTGCATAACAGCCAACAAGCTAACGACTTTCTGGAAGAAAT
GGGTAAAACCATGAAAGCGGCCATTGAAGGTCTACTGGTACTGCAACGTACACAGCATGGGCTGCGTGATAAACAATTGC
GCCCTATTGAAGATAATCCGTTACGGCTGAACATGGATTACAACACCACCATGCAAGTGATGTTTGCGGATCAAAAAAGC
CCGGTACATCTCTCTGCCCCCTCCGCTGTCGCTGAAAGCTTACATAACCTGCAATTGCATTATCAGGCTAACCGGATTGC
GATCACTGCCGCATTGAACACCATGCTGGATGCTTTCTCACCGGAACACCTACTGAATCGTTTTGCCCAATACCGCCGCA
GCAATGAAACACAGGAAAAAGATGCAACCTGGGCATGGGAAATGTACACCAGTTACTACCGCGAACTGGCTTCCAGCCGC
CAACAAGGGTTCGAAAAACTGTTCGGTGAAGTCTATGAGCAAGCTTATGACCGTGCTCTACGTCAAGGTTTAGAGGATAG
CCAGTAA