Detailed information of component protein


Summary

Component ID T6CP011415
Component protein type PAAR
T6SS ID (Type) T6SS00026 experimental (Type i4b)
Strain Ralstonia solanacearum GMI1000
Replicon plasmid pGMI1000MP
Sequence Protein sequence (90 a.a.); Nucleotide sequence (270 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RS_RS20780
Coordinate (Strand) 966602..966871 (-)
NCBI ID WP_011004063.1
RefSeq NC_003296
Uniprot ID M4UKU1_RALSL, A0A223GUJ6_9RALS, Q8XRR6_RALSO, A0A0K1ZRV3_RALSL
KEGG ID rso:RSp0765, rse:F504_4453
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 5.1e-25 9..80
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-89 MTRPFILLGDKTDHGGVVITASGNTTTGGKGIACVGDKVTCPQSGHGGTTVIVTGDPNVVIDGRQAARHGDKTACGATLLASQGTTGSI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7558 - -


  Protein sequence: 90 a.a.    

>T6CP011415 NC_003296:c966871-966602 [Ralstonia solanacearum GMI1000] [PAAR]
MTRPFILLGDKTDHGGVVITASGNTTTGGKGIACVGDKVTCPQSGHGGTTVIVTGDPNVVIDGRQAARHGDKTACGATLL
ASQGTTGSI*

  Nucleotide sequence: 270 bp    

>T6CP011415 NC_003296:c966871-966602 [Ralstonia solanacearum GMI1000] [PAAR]
ATGACACGTCCCTTCATCCTGCTGGGCGACAAGACCGACCACGGCGGCGTGGTGATCACCGCCTCGGGCAACACGACCAC
CGGCGGCAAGGGCATCGCCTGCGTCGGCGACAAGGTCACGTGCCCGCAATCGGGTCACGGCGGCACGACCGTCATCGTCA
CGGGCGATCCGAACGTCGTCATCGATGGCCGGCAGGCCGCGCGCCATGGCGACAAGACGGCCTGCGGCGCCACCCTCCTG
GCCAGCCAGGGCACCACCGGCAGCATCTGA