Detailed information of component protein


Summary

Component ID T6CP011412
Component protein type PAAR
T6SS ID (Type) T6SS00022 insolico (Type Unknown)
Strain Yersinia pestis CO92
Replicon chromosome
Sequence Protein sequence (1513 a.a.); Nucleotide sequence (4539 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPO_RS19055
Coordinate (Strand) 4029049..4033587 (+)
NCBI ID WP_002210022.1
RefSeq NC_003143
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 1.8e-15 183..247
DUF6531 PF20148.1 8.5e-14 316..389
RHS PF03527.16 2.6e-10 1270..1302
RHS_repeat PF05593.16 4.1e-06 645..682
RHS_repeat PF05593.16 1.5e-05 840..874
RHS_repeat PF05593.16 1.8e-05 1140..1180
RHS_repeat PF05593.16 6.5e-05 776..812
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-60 MTVAQSIGTGYGAAGAQSALRQTALGQQSPARTDYQVSNPNVGNIARASDSLLNVAESQQ
Transmembrane helix 61-83 FNTLVTAGFGMQAIAAGVAGGYV
Outside 84-124 GAKIGNKLGHGIARALNFNQVATEGESPAHLGHPIAHQKKD
Transmembrane helix 125-147 WGVWGAIGGILLGAAAAALVVVT
Inside 148-151 FGTG
Transmembrane helix 152-174 LVVIAAAAAAAGLIGGIAAATGA
Outside 175-1512 ALGQYGDNKGVIAEGSANVFFEGQPVARVGDKIQCSDHPSSPPPMIAEGAKTVFANQKQIARLGHRTTCDGNINAGCGSLAITQETAYVYEVADSRNPYLRWSAVILSFLPIQKKFEQGFRSLKKPPNTAVNATHNCPTGSDPVDMVSGDYLQVWPVIDIAGVLPVRLQRTYRSGDYFTVSGCFGHKWADSWSQHLVVHEDNIDYIDEEGVGLSFFTPENKVQAVNLYNLRYELVGERHGELRVFDRSTQQTLHFNQQQQQQRYLSAITDRKGNRIDFRYQQGELISVEHSDGYVLEIDSRGRTIHAVELVTQEKRQKLLQSTFSERGYLVQCQSFQYGTLSHEYDPKGYMVRWRDTDSTDVAVRYDISGRVVALKTSTGFFADHFIYHDKERYTIYRDGEGGETGYHYNENNLLIKLVDPLGNTTLTDWDLTQKIKETDALGRITRFIYNERGDLTAVILPDETRTEYEYNPSGVVTAFTSSAGDSWQYQYDRQGLLRQVTYPSGQTMSFRYGKKGEVLRKIIAEDQVWRYHYDHHGCLSTIIDPKGNSTAVTLDVLGRLFSHQNALGELTRYTHSDAHASPAGSVTKMVMPDGVEQAIAYDSEKRIAALTDGAGKTTRYEYGGFDLLTGLIRPDGQRLTFGYDTLTRLNQVTNASGDTYRYTRDRAGQVISETDFTGRTVHYQYDAVGRRIGARYPDQRLVRWHYSMQDQVLAQQTWHCDALSSTLVGTVSYGYDGAGRLLSATNADAVVEFDYDEAGQLVAERLNGREVRHQWDALNGTPVARQVGELGLTFVYGAQGELTRLQLAGHQPLQLQHDRLGRETVRESAAGFIQACNYTPSGLLAHQAAGRNSALFQQQLIAPESPALHGSAVNRSWQYDRAYNVVGMDDGRWGKTQYQYDRNDQVVRADFGGFLPLQEQFSYDVNQNLREHRCLPRGAQAVLAQASQQQQAGRVVKRGDSQYRYDAAGRLVEKRSQKDGYRPQLWRYRWNEQDQLSELITPTGARWRYGYDAFGRRIRKLRVVDTPPLNEMDAPSTGPATASLAGYAYLWSGDQLIEEVPVYADGTVAYEQGIHWLYAPGGLTPMARYAQGKLHYVVADHLGTPRELLNEQGKVVWASRLSTWGQAELWRQAANEEDRVSCNLRFAGQYADAESGLHYNRFRYYDGETGQYLCPDPIGLEGGLNPYGYVHNPVSWVDPLGLATCPMREVNGTKIFGKGQKDGTPGHDQFSEVIANKLAMSGKFKEVYLNRSYNFANGKGISGRRPDIMAVDMNGKVHAIELASKTDMGRKFPSLRTRNQDAMKNLPSIDRGSVIVLEHQYNSSKIKNALDNLISGI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7649 - -


  Protein sequence: 1513 a.a.    

>T6CP011412 NC_003143:4029049-4033587 [Yersinia pestis CO92] [PAAR]
MTVAQSIGTGYGAAGAQSALRQTALGQQSPARTDYQVSNPNVGNIARASDSLLNVAESQQFNTLVTAGFGMQAIAAGVAG
GYVGAKIGNKLGHGIARALNFNQVATEGESPAHLGHPIAHQKKDWGVWGAIGGILLGAAAAALVVVTFGTGLVVIAAAAA
AAGLIGGIAAATGAALGQYGDNKGVIAEGSANVFFEGQPVARVGDKIQCSDHPSSPPPMIAEGAKTVFANQKQIARLGHR
TTCDGNINAGCGSLAITQETAYVYEVADSRNPYLRWSAVILSFLPIQKKFEQGFRSLKKPPNTAVNATHNCPTGSDPVDM
VSGDYLQVWPVIDIAGVLPVRLQRTYRSGDYFTVSGCFGHKWADSWSQHLVVHEDNIDYIDEEGVGLSFFTPENKVQAVN
LYNLRYELVGERHGELRVFDRSTQQTLHFNQQQQQQRYLSAITDRKGNRIDFRYQQGELISVEHSDGYVLEIDSRGRTIH
AVELVTQEKRQKLLQSTFSERGYLVQCQSFQYGTLSHEYDPKGYMVRWRDTDSTDVAVRYDISGRVVALKTSTGFFADHF
IYHDKERYTIYRDGEGGETGYHYNENNLLIKLVDPLGNTTLTDWDLTQKIKETDALGRITRFIYNERGDLTAVILPDETR
TEYEYNPSGVVTAFTSSAGDSWQYQYDRQGLLRQVTYPSGQTMSFRYGKKGEVLRKIIAEDQVWRYHYDHHGCLSTIIDP
KGNSTAVTLDVLGRLFSHQNALGELTRYTHSDAHASPAGSVTKMVMPDGVEQAIAYDSEKRIAALTDGAGKTTRYEYGGF
DLLTGLIRPDGQRLTFGYDTLTRLNQVTNASGDTYRYTRDRAGQVISETDFTGRTVHYQYDAVGRRIGARYPDQRLVRWH
YSMQDQVLAQQTWHCDALSSTLVGTVSYGYDGAGRLLSATNADAVVEFDYDEAGQLVAERLNGREVRHQWDALNGTPVAR
QVGELGLTFVYGAQGELTRLQLAGHQPLQLQHDRLGRETVRESAAGFIQACNYTPSGLLAHQAAGRNSALFQQQLIAPES
PALHGSAVNRSWQYDRAYNVVGMDDGRWGKTQYQYDRNDQVVRADFGGFLPLQEQFSYDVNQNLREHRCLPRGAQAVLAQ
ASQQQQAGRVVKRGDSQYRYDAAGRLVEKRSQKDGYRPQLWRYRWNEQDQLSELITPTGARWRYGYDAFGRRIRKLRVVD
TPPLNEMDAPSTGPATASLAGYAYLWSGDQLIEEVPVYADGTVAYEQGIHWLYAPGGLTPMARYAQGKLHYVVADHLGTP
RELLNEQGKVVWASRLSTWGQAELWRQAANEEDRVSCNLRFAGQYADAESGLHYNRFRYYDGETGQYLCPDPIGLEGGLN
PYGYVHNPVSWVDPLGLATCPMREVNGTKIFGKGQKDGTPGHDQFSEVIANKLAMSGKFKEVYLNRSYNFANGKGISGRR
PDIMAVDMNGKVHAIELASKTDMGRKFPSLRTRNQDAMKNLPSIDRGSVIVLEHQYNSSKIKNALDNLISGI*

  Nucleotide sequence: 4539 bp    

>T6CP011412 NC_003143:4029049-4033587 [Yersinia pestis CO92] [PAAR]
ATGACTGTCGCACAAAGTATTGGCACCGGGTATGGCGCGGCTGGCGCGCAATCGGCATTACGTCAAACCGCGCTGGGGCA
ACAGAGCCCGGCGCGGACGGATTATCAGGTCAGTAATCCCAATGTGGGGAATATCGCGCGAGCGAGTGATTCTCTGCTGA
ATGTGGCGGAAAGTCAGCAGTTTAACACTCTGGTGACCGCCGGTTTTGGGATGCAGGCGATTGCCGCCGGGGTGGCCGGG
GGATATGTCGGTGCCAAAATCGGCAATAAGTTAGGTCACGGTATTGCCCGTGCGCTTAATTTTAATCAAGTGGCGACGGA
AGGAGAAAGCCCCGCGCACCTGGGCCATCCCATTGCCCATCAGAAAAAAGATTGGGGGGTGTGGGGGGCCATTGGCGGTA
TTTTACTGGGGGCAGCGGCGGCGGCATTGGTGGTCGTCACCTTTGGTACGGGGTTGGTGGTGATTGCCGCGGCGGCGGCC
GCAGCCGGGTTAATCGGCGGTATCGCCGCCGCGACCGGGGCGGCATTAGGACAATACGGTGATAACAAAGGCGTGATTGC
TGAAGGCTCCGCCAACGTCTTCTTTGAAGGCCAGCCGGTGGCCCGGGTGGGGGATAAGATCCAATGCAGCGATCACCCCA
GTTCACCGCCGCCGATGATTGCCGAGGGCGCAAAAACCGTATTTGCCAACCAAAAGCAGATCGCGCGTCTGGGGCACCGT
ACCACCTGCGATGGCAATATCAATGCGGGATGCGGTTCGCTCGCCATCACGCAGGAAACGGCTTATGTGTATGAAGTGGC
AGACAGCCGTAATCCGTATTTACGCTGGTCAGCGGTTATTCTGAGTTTCTTGCCAATACAGAAAAAATTTGAGCAAGGGT
TTCGCTCCTTAAAAAAGCCGCCCAATACCGCGGTCAACGCTACCCATAACTGCCCGACCGGCAGTGATCCTGTTGATATG
GTCTCCGGCGATTACCTTCAGGTCTGGCCCGTGATTGATATTGCCGGTGTTTTGCCTGTCCGGTTACAGCGTACTTATCG
TTCCGGCGATTATTTCACGGTCTCGGGTTGCTTTGGTCATAAATGGGCGGATAGCTGGTCACAACACTTGGTCGTGCACG
AAGACAACATTGATTACATTGATGAGGAAGGGGTGGGGCTGAGCTTCTTTACGCCAGAGAATAAAGTCCAGGCCGTCAAT
CTGTATAACCTGCGTTATGAGTTAGTGGGGGAGCGTCATGGCGAACTCAGGGTTTTTGACCGGTCAACTCAGCAGACACT
GCATTTTAATCAACAGCAACAACAGCAGCGTTATTTATCGGCTATCACCGACCGCAAAGGGAACCGAATCGATTTTCGTT
ACCAACAGGGGGAACTGATATCGGTCGAGCACAGTGACGGCTATGTGCTGGAGATCGACAGCCGTGGCAGGACAATACAC
GCGGTCGAGCTTGTCACGCAGGAGAAAAGACAAAAGCTGTTGCAGAGTACATTCAGTGAGCGCGGTTACCTCGTTCAGTG
CCAGAGTTTCCAGTATGGCACGCTGTCGCATGAATATGATCCGAAGGGGTATATGGTGCGCTGGCGGGATACGGATAGCA
CGGATGTGGCTGTCCGTTATGATATTTCAGGGCGGGTGGTGGCACTAAAAACATCGACCGGTTTTTTTGCCGACCATTTT
ATTTATCATGACAAAGAACGCTATACGATCTATCGCGATGGGGAAGGGGGAGAAACCGGTTATCACTATAATGAAAACAA
TCTGCTGATAAAGTTAGTCGATCCGTTAGGCAATACCACCCTCACCGACTGGGACTTGACCCAGAAAATAAAAGAAACCG
ATGCATTAGGGCGTATCACCCGGTTTATTTACAATGAGCGCGGTGATTTAACCGCCGTGATCCTCCCGGATGAAACCCGT
ACCGAATATGAGTATAACCCGTCTGGCGTGGTCACTGCGTTTACGTCTTCGGCGGGGGATAGCTGGCAATATCAGTATGA
CAGGCAGGGATTGTTACGACAGGTAACTTATCCTTCCGGCCAGACGATGTCGTTTCGCTACGGCAAGAAGGGAGAAGTGC
TGCGCAAGATCATCGCGGAAGATCAGGTGTGGCGTTACCACTATGATCACCACGGTTGTTTAAGCACCATTATCGATCCG
AAGGGGAACAGTACAGCCGTCACACTGGATGTGCTGGGGCGGTTATTTTCTCACCAAAACGCCCTCGGGGAGCTCACCCG
TTACACACACAGTGACGCGCATGCCAGTCCGGCGGGCAGCGTCACAAAAATGGTCATGCCGGATGGTGTGGAGCAGGCCA
TTGCCTATGACAGCGAGAAGCGTATTGCCGCGCTGACCGATGGCGCGGGGAAAACCACCCGTTACGAATACGGGGGTTTT
GATTTACTGACCGGCCTGATACGCCCGGACGGGCAGCGGCTGACCTTCGGCTATGACACACTGACGCGCCTGAATCAGGT
GACCAATGCGTCAGGTGACACCTATCGTTATACCCGTGATCGGGCCGGGCAGGTGATCAGCGAAACCGATTTTACCGGGC
GCACGGTTCATTATCAGTATGATGCGGTGGGGCGGCGTATCGGGGCGCGTTACCCGGATCAGCGCCTTGTTCGCTGGCAC
TACTCGATGCAGGATCAGGTGCTGGCGCAGCAGACCTGGCACTGCGATGCACTGAGTTCCACGCTGGTTGGCACGGTCAG
CTACGGTTATGACGGTGCCGGTCGTTTGCTGAGCGCGACCAATGCGGATGCGGTGGTGGAGTTTGATTACGACGAGGCGG
GTCAGTTGGTTGCGGAGCGGCTGAATGGCCGGGAGGTGCGGCATCAGTGGGATGCGCTAAACGGCACCCCTGTTGCCCGA
CAGGTGGGTGAGCTGGGGCTGACGTTTGTGTACGGCGCACAGGGCGAACTGACCCGGCTACAGCTGGCGGGCCATCAGCC
CCTTCAGTTGCAGCATGACCGGTTGGGGCGGGAGACGGTACGTGAAAGCGCGGCCGGGTTTATTCAGGCCTGCAATTATA
CCCCGAGCGGGCTGTTGGCCCATCAGGCGGCCGGGCGTAACTCGGCATTATTCCAGCAACAGTTGATCGCCCCGGAGAGC
CCGGCCTTGCACGGCAGTGCGGTCAACCGCAGTTGGCAGTATGACCGGGCTTATAACGTGGTGGGGATGGATGACGGGCG
TTGGGGTAAAACGCAGTACCAATATGACCGCAATGACCAGGTCGTTCGCGCTGATTTTGGTGGTTTTTTGCCGTTGCAGG
AGCAGTTTAGCTACGATGTGAACCAGAACCTGCGCGAGCATCGCTGTTTACCGCGTGGGGCACAGGCGGTTTTGGCGCAG
GCGAGCCAGCAACAGCAGGCGGGCCGGGTGGTGAAGCGCGGTGACAGTCAGTACCGTTACGATGCTGCCGGGCGACTGGT
GGAGAAACGCAGCCAAAAAGACGGCTACCGGCCACAGCTGTGGCGCTACCGCTGGAATGAGCAGGACCAGTTATCCGAAT
TGATCACGCCGACGGGGGCGCGCTGGCGCTACGGTTATGATGCCTTTGGGCGACGTATTCGAAAACTGCGGGTAGTGGAT
ACCCCGCCGCTCAATGAGATGGACGCTCCTTCCACCGGTCCGGCCACGGCATCACTGGCCGGTTACGCGTACCTGTGGAG
CGGCGACCAGTTAATCGAAGAGGTGCCGGTGTATGCCGACGGCACGGTGGCGTATGAGCAGGGGATCCACTGGCTGTATG
CGCCGGGCGGATTAACGCCGATGGCCCGCTACGCGCAAGGCAAACTGCATTATGTGGTGGCGGATCATCTGGGTACGCCG
CGGGAGTTGTTGAATGAGCAGGGCAAGGTGGTGTGGGCGAGCCGACTGAGCACCTGGGGGCAGGCGGAATTATGGCGACA
GGCGGCGAATGAGGAGGATCGGGTCAGCTGTAACCTGCGTTTTGCGGGTCAGTACGCGGATGCAGAATCCGGGTTGCATT
ACAACCGGTTCCGCTACTATGATGGCGAGACGGGGCAATATCTATGCCCGGACCCGATAGGGCTGGAAGGGGGATTAAAC
CCGTACGGGTATGTACATAATCCGGTGAGCTGGGTGGATCCGCTGGGGCTGGCAACATGTCCAATGCGTGAAGTTAACGG
AACAAAAATATTTGGTAAAGGCCAAAAAGATGGAACTCCTGGTCATGATCAGTTCTCTGAAGTTATAGCCAATAAATTAG
CCATGAGTGGTAAGTTTAAAGAGGTCTATTTAAATAGGTCATATAATTTTGCTAATGGTAAAGGAATCTCAGGACGACGA
CCTGACATTATGGCTGTTGATATGAATGGTAAAGTTCATGCTATAGAATTGGCATCTAAAACAGATATGGGTAGAAAATT
CCCATCTCTGAGAACTCGAAACCAAGATGCAATGAAAAACTTACCAAGCATTGATCGGGGAAGTGTTATTGTATTAGAAC
ACCAATATAATTCTTCGAAGATTAAGAATGCATTAGATAATCTTATTTCTGGTATATAG