Detailed information of component protein


Summary

Component ID T6CP011411
Component protein type PAAR
T6SS ID (Type) T6SS00022 insolico (Type Unknown)
Strain Yersinia pestis CO92
Replicon chromosome
Sequence Protein sequence (955 a.a.); Nucleotide sequence (2865 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPO_RS19010
Coordinate (Strand) 4020241..4023105 (+)
NCBI ID WP_002213873.1
RefSeq NC_003143
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF6531 PF20148.1 2e-22 237..313
PAAR_motif PF05488.15 9.7e-13 83..149
RHS_repeat PF05593.16 7.1e-07 640..671
RHS_repeat PF05593.16 3.3e-05 865..901
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-19 MFEAARVDDKLYHSSALAG
Transmembrane helix 20-42 FIIGSIIGAAVIFAAAAYAASIV
Inside 43-48 LTGGAT
Transmembrane helix 49-71 LVATGFIVGMGVTTLGVVAGGLI
Outside 72-954 RSVGEKIGSMCHHDVGQITTGSKNVKVNSKRAAHVELSTVACKDDSAIQRMAEGSSNIFINSKAAVRLEDKTTCDAVVDSASSNVTFGGGRVQYLDIKREISDEMRDLSEKLFIVAGLAGGIFGAAKQAGCFGLKCLSKIALGEMAGAAAGYGLEKGVGAIAGYFGYPVDVISGQKLLTGEGDDTDFILPGIFPLHWSRIYRSENHHVGALGQGWSLVWERSLRKEDDSIVYQNDEGREIVFPLIKRGERYFSPTEHIWLARTERDTYAISSPFETCFIFEAFSEAGVAKLASLEDLNGHALYFSYDDIGQLKKISTTSGYGVYCQYEKGRLVSVACVKGGTPGTLVRYQYNEQHQLVSVTNREGQITRQFGYHGHLINKLADVRGLECRYTWADIGGTPRITHSATNLGEQWQFDYDIDNQQTTLTDLNTGQTACWGYNAQHLITDYRDFDGGKYAFDYNDLNMPVRVVLAGERTLVLVYDALARPIQITDPLKRETHIDYHRNSLRVVRRQYPDGQVWKGEYDRTGRLLKENAPDGGVTLYHYPGASSLPERITNAVGAQTHLGWERHGQLTEHTDCSGKLTRYEYDIDGHLLTVIDAENHSTHYSYNRLGQPTGIRYADGRKEQLRYNAQGLVEQFTDPVGRQLHWRYNLRGQPVSFTDRLQREYRYRYDCHGQMIELDNANGGQYHFRWSSGGQLVEEQYPDNLVRRYRYGESGMLMALETTAPTVDDLTVSRQVSFDYDAGGRMTQRLTGMSATRYDWDIMDRLLLAERVPTAVGEQAGIVGHGVRLAYDKAGHLLTESGDLGAVTYQWDPLHHLAALTLPDGQTLSWLRYGAGHVSAIRHGDTLISEFSRDNLHREVSRTQGILTQYRDYDAMGRRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9561 - -


  Protein sequence: 955 a.a.    

>T6CP011411 NC_003143:4020241-4023105 [Yersinia pestis CO92] [PAAR]
MFEAARVDDKLYHSSALAGFIIGSIIGAAVIFAAAAYAASIVLTGGATLVATGFIVGMGVTTLGVVAGGLIRSVGEKIGS
MCHHDVGQITTGSKNVKVNSKRAAHVELSTVACKDDSAIQRMAEGSSNIFINSKAAVRLEDKTTCDAVVDSASSNVTFGG
GRVQYLDIKREISDEMRDLSEKLFIVAGLAGGIFGAAKQAGCFGLKCLSKIALGEMAGAAAGYGLEKGVGAIAGYFGYPV
DVISGQKLLTGEGDDTDFILPGIFPLHWSRIYRSENHHVGALGQGWSLVWERSLRKEDDSIVYQNDEGREIVFPLIKRGE
RYFSPTEHIWLARTERDTYAISSPFETCFIFEAFSEAGVAKLASLEDLNGHALYFSYDDIGQLKKISTTSGYGVYCQYEK
GRLVSVACVKGGTPGTLVRYQYNEQHQLVSVTNREGQITRQFGYHGHLINKLADVRGLECRYTWADIGGTPRITHSATNL
GEQWQFDYDIDNQQTTLTDLNTGQTACWGYNAQHLITDYRDFDGGKYAFDYNDLNMPVRVVLAGERTLVLVYDALARPIQ
ITDPLKRETHIDYHRNSLRVVRRQYPDGQVWKGEYDRTGRLLKENAPDGGVTLYHYPGASSLPERITNAVGAQTHLGWER
HGQLTEHTDCSGKLTRYEYDIDGHLLTVIDAENHSTHYSYNRLGQPTGIRYADGRKEQLRYNAQGLVEQFTDPVGRQLHW
RYNLRGQPVSFTDRLQREYRYRYDCHGQMIELDNANGGQYHFRWSSGGQLVEEQYPDNLVRRYRYGESGMLMALETTAPT
VDDLTVSRQVSFDYDAGGRMTQRLTGMSATRYDWDIMDRLLLAERVPTAVGEQAGIVGHGVRLAYDKAGHLLTESGDLGA
VTYQWDPLHHLAALTLPDGQTLSWLRYGAGHVSAIRHGDTLISEFSRDNLHREVSRTQGILTQYRDYDAMGRRL*

  Nucleotide sequence: 2865 bp    

>T6CP011411 NC_003143:4020241-4023105 [Yersinia pestis CO92] [PAAR]
ATGTTTGAAGCGGCCCGTGTTGATGACAAGCTTTATCATTCCAGTGCCTTAGCGGGTTTTATTATTGGCTCCATTATTGG
TGCCGCCGTGATTTTTGCGGCCGCGGCTTACGCCGCCTCCATTGTTCTCACCGGCGGGGCGACGCTGGTCGCTACCGGCT
TTATTGTGGGTATGGGGGTGACCACGCTGGGCGTCGTTGCCGGTGGGTTAATACGCTCCGTGGGCGAAAAAATAGGGAGC
ATGTGCCATCACGATGTCGGACAAATTACGACAGGGTCCAAAAACGTTAAAGTGAACAGTAAACGGGCGGCGCATGTCGA
GCTCAGTACCGTGGCCTGTAAAGATGACTCCGCCATTCAGCGCATGGCCGAAGGTTCGTCAAATATCTTTATTAACAGTA
AAGCCGCCGTTCGTCTGGAAGATAAAACGACCTGTGATGCGGTTGTCGATTCCGCTTCCAGTAATGTGACGTTTGGTGGG
GGGCGCGTTCAGTATCTCGATATTAAACGCGAGATTTCTGATGAAATGCGTGATTTGTCAGAGAAGCTGTTTATTGTCGC
CGGGCTGGCGGGCGGCATATTTGGGGCGGCAAAACAGGCGGGGTGTTTCGGCCTTAAATGCCTGAGCAAGATTGCGTTGG
GTGAGATGGCCGGGGCGGCTGCCGGGTATGGGTTGGAAAAAGGGGTTGGGGCCATCGCCGGTTATTTCGGTTACCCGGTT
GATGTGATCAGTGGACAGAAATTGCTGACAGGTGAGGGCGATGATACCGATTTTATTCTGCCGGGTATCTTCCCGCTGCA
CTGGAGCCGGATTTATCGCAGTGAAAATCACCATGTCGGGGCGCTGGGACAAGGCTGGTCTCTGGTATGGGAGCGTTCAT
TACGCAAAGAAGATGACAGCATTGTTTATCAGAATGATGAAGGTCGGGAGATTGTCTTTCCCCTGATTAAACGTGGAGAG
CGCTATTTCTCCCCCACGGAGCATATCTGGCTGGCACGTACCGAGCGTGATACCTATGCCATCAGCAGCCCGTTTGAAAC
CTGTTTTATTTTTGAGGCCTTTTCTGAGGCTGGCGTTGCGAAATTAGCCAGCCTCGAAGATCTCAATGGTCATGCCCTGT
ATTTCTCTTATGACGATATCGGGCAACTGAAAAAAATATCGACCACCAGCGGTTATGGGGTGTATTGCCAGTATGAAAAA
GGGCGTCTGGTGTCCGTTGCCTGCGTCAAGGGCGGTACGCCGGGCACACTGGTCCGCTACCAGTATAATGAACAGCACCA
GTTGGTCAGCGTCACTAACCGTGAGGGGCAAATCACCCGCCAGTTTGGTTACCATGGCCATCTGATCAATAAACTGGCGG
ATGTCAGGGGGCTGGAGTGCCGTTACACATGGGCTGATATCGGCGGAACCCCGCGAATTACGCACAGTGCCACCAATCTG
GGGGAGCAGTGGCAGTTTGATTATGATATCGACAATCAACAGACCACCCTGACGGACCTCAATACCGGGCAGACCGCCTG
CTGGGGATATAACGCCCAACATTTAATTACCGACTATCGGGATTTTGATGGCGGGAAATATGCATTTGACTACAACGACC
TCAATATGCCGGTACGCGTTGTGCTGGCAGGCGAGAGAACGCTCGTTCTGGTTTACGATGCACTGGCGCGCCCGATCCAG
ATCACCGATCCGCTAAAACGTGAAACCCACATTGATTATCACCGTAACAGTCTGCGGGTGGTGCGCCGTCAGTACCCTGA
CGGGCAGGTCTGGAAGGGGGAATATGACCGTACCGGCCGTTTGCTGAAAGAGAACGCGCCGGATGGCGGGGTGACGCTTT
ATCATTATCCAGGGGCCTCATCCCTTCCTGAACGCATAACCAATGCCGTAGGGGCGCAGACACACCTTGGTTGGGAAAGG
CACGGGCAACTGACGGAGCACACCGACTGCTCGGGTAAACTGACCCGCTACGAATATGATATCGATGGCCATCTGCTGAC
GGTCATCGATGCTGAAAACCATTCAACACATTACAGCTACAACCGTCTCGGGCAGCCCACCGGGATCAGGTACGCCGATG
GCCGCAAAGAGCAGTTGCGGTATAACGCTCAGGGGCTGGTTGAACAGTTTACCGATCCTGTCGGGCGGCAGTTGCACTGG
CGTTATAACCTGCGGGGTCAGCCGGTCAGCTTTACTGATCGTCTGCAACGGGAATACCGTTACCGCTATGACTGCCATGG
GCAGATGATTGAGCTGGATAATGCCAATGGTGGCCAGTATCACTTCCGGTGGAGCAGTGGCGGGCAATTGGTGGAAGAGC
AGTATCCCGATAACCTTGTCCGGCGTTATCGCTATGGGGAGAGCGGGATGCTGATGGCGCTGGAGACCACCGCGCCCACG
GTTGACGATCTTACCGTCTCCCGGCAGGTCAGTTTTGACTATGATGCGGGCGGGCGAATGACGCAGCGCCTGACGGGCAT
GAGTGCGACCCGGTATGACTGGGACATCATGGACCGTTTATTGCTGGCCGAGCGTGTGCCAACGGCGGTGGGCGAACAGG
CGGGGATCGTCGGTCATGGTGTTCGTTTGGCGTATGACAAGGCCGGGCATTTACTGACGGAAAGCGGTGACCTGGGTGCG
GTGACGTATCAGTGGGATCCGCTGCATCATCTGGCCGCCCTGACGCTGCCCGATGGTCAGACGCTGTCATGGTTGCGTTA
CGGTGCGGGCCATGTCAGTGCCATTCGTCATGGTGATACGCTTATTTCCGAGTTCAGCCGGGATAATCTTCATCGGGAAG
TGAGCCGGACCCAGGGTATTTTGACGCAGTATCGTGATTATGACGCGATGGGGCGGCGGTTGTAG