SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP011410
Component protein type	FHA
T6SS ID (Type)	T6SS00022 (Type Unknown)
Strain	Yersinia pestis CO92
Replicon	chromosome
Sequence	Protein sequence (439 a.a.); Nucleotide sequence (1317 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	YPO_RS18945
Coordinate (Strand)	4002896..4004212 (+)
NCBI ID	WP_002212103.1
RefSeq	NC_003143
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-438	MDKKQPTLSLRVVNSDKLESGKQASSLFHTQGGSVGSDGSHHWSIQDQGGNISPSQFAIEWRDGSFCLRMLNGSLNINHSMLTPNSGFVRLQQGDEMTLGNLVIKSHISRSAADMIDPLMVSPESLVSSYSNPMDAMMEGEPLASPHHQQDSRLAATVSHNFSHDPLRVLETESLTTQGHDAVISDADHSLQQDRYRNPLFSSPLSDTPKDSAMDQAFIDLPQISTFLNGKQAGGKPEGLNNQMEQHHVAITPLMRGFDAQLPIRNSQEAHDFLEEAGKTLKATIEGLLALQRSQHGLRDKHLRPIEDNPLRLNMDYDTTLNLMFADQKSPVHLSAPAAVAESLDNLRLHHQANQQAITQALNTMLEAFSPERLLTRFTHYLRSNERQEQDSAWAWDMYKNYYNELASSRQQGFEKLFGEVYEQAYDRALRQGMKDSE

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9602	-	-

Protein sequence: 439 a.a.

						>T6CP011410 NC_003143:4002896-4004212 [Yersinia pestis CO92] [FHA]
MDKKQPTLSLRVVNSDKLESGKQASSLFHTQGGSVGSDGSHHWSIQDQGGNISPSQFAIEWRDGSFCLRMLNGSLNINHS
MLTPNSGFVRLQQGDEMTLGNLVIKSHISRSAADMIDPLMVSPESLVSSYSNPMDAMMEGEPLASPHHQQDSRLAATVSH
NFSHDPLRVLETESLTTQGHDAVISDADHSLQQDRYRNPLFSSPLSDTPKDSAMDQAFIDLPQISTFLNGKQAGGKPEGL
NNQMEQHHVAITPLMRGFDAQLPIRNSQEAHDFLEEAGKTLKATIEGLLALQRSQHGLRDKHLRPIEDNPLRLNMDYDTT
LNLMFADQKSPVHLSAPAAVAESLDNLRLHHQANQQAITQALNTMLEAFSPERLLTRFTHYLRSNERQEQDSAWAWDMYK
NYYNELASSRQQGFEKLFGEVYEQAYDRALRQGMKDSE*					

Nucleotide sequence: 1317 bp

						>T6CP011410 NC_003143:4002896-4004212 [Yersinia pestis CO92] [FHA]
ATGGATAAAAAACAACCAACGCTGTCATTGCGGGTCGTCAACAGCGATAAATTAGAGAGTGGCAAACAAGCCAGCAGCCT
GTTTCATACGCAAGGGGGCAGTGTCGGCAGTGACGGTAGCCATCATTGGTCGATTCAGGACCAAGGCGGCAATATCAGCC
CGTCACAGTTTGCTATTGAATGGCGTGATGGCTCTTTCTGCCTGCGGATGCTGAATGGCTCTCTGAACATTAATCATTCG
ATGCTGACACCCAATTCGGGTTTCGTTCGCCTACAGCAAGGGGATGAAATGACGTTGGGTAATCTGGTGATCAAAAGCCA
TATCAGCCGTTCTGCTGCCGATATGATCGATCCACTGATGGTGTCACCGGAGTCACTGGTATCGAGTTACAGCAACCCGA
TGGATGCCATGATGGAAGGGGAGCCGTTGGCCTCGCCTCATCATCAGCAAGACAGCCGGTTAGCCGCGACGGTTAGCCAT
AATTTCAGCCATGATCCATTGCGGGTATTGGAAACTGAAAGCCTGACCACGCAAGGCCATGACGCCGTGATATCTGATGC
TGATCACTCTCTACAGCAGGACCGATACCGTAACCCACTTTTCTCTTCCCCGCTCTCTGATACCCCCAAGGACAGTGCTA
TGGATCAGGCGTTTATCGATCTCCCGCAGATCAGTACCTTTCTTAACGGTAAACAAGCGGGGGGCAAACCAGAAGGATTA
AATAACCAAATGGAACAACATCACGTTGCCATTACGCCGCTGATGCGTGGTTTTGACGCTCAACTCCCGATCCGCAACAG
CCAGGAAGCTCACGATTTCCTTGAAGAGGCGGGTAAAACACTCAAAGCGACAATCGAAGGTCTGCTCGCCTTACAACGCA
GCCAACATGGCTTGCGTGATAAGCACTTACGGCCGATTGAAGATAATCCATTGCGTCTGAATATGGATTACGACACCACC
CTCAACTTGATGTTTGCCGATCAAAAAAGCCCGGTTCATCTTTCAGCGCCCGCCGCCGTGGCCGAAAGCCTGGATAACCT
GCGTTTGCATCATCAGGCCAATCAACAGGCGATTACGCAAGCCTTGAACACCATGTTGGAAGCCTTCTCCCCTGAGCGTT
TACTGACGCGTTTTACCCATTATTTGCGCAGTAATGAGCGGCAAGAGCAGGACTCCGCCTGGGCGTGGGATATGTACAAA
AACTACTATAACGAGCTGGCCTCCAGCCGCCAGCAAGGTTTTGAAAAACTGTTTGGCGAAGTGTATGAGCAAGCCTATGA
CCGGGCCTTACGTCAAGGCATGAAGGATAGCGAGTAA					