Detailed information of component protein


Summary

Component ID T6CP011392
Component protein type PAAR
T6SS ID (Type) T6SS00006 insolico (Type i1)
Strain Escherichia coli O157:H7 str. EDL933
Replicon chromosome
Sequence Protein sequence (1405 a.a.); Nucleotide sequence (4215 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) Z_RS01245
Coordinate (Strand) 267079..271293 (+)
NCBI ID WP_000509132.1
RefSeq NC_002655
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF6531 PF20148.1 2.5e-18 47..123
RHS PF03527.16 1.4e-13 1150..1184
RHS_repeat PF05593.16 5.7e-09 584..620
RHS_repeat PF05593.16 1.3e-07 458..491
RHS_repeat PF05593.16 5.4e-05 498..537
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1405 a.a.    

>T6CP011392 NC_002655:267079-271293 [Escherichia coli O157:H7 str. EDL933] [PAAR]
MGGKPAARQGDMTRKGLDIVQGSAGVLIGAPTGVACSVCPGGITYANPVNPVLGAKVLPGETDLALPGPLPFILSRAYSS
YRTRTPAPVGVFGPGWKAPFDIRLQIRDEGLILNDNGGRSIHFEPLFPGEISYSRSESFWLARGGVAEQHSSQPLSALWQ
VLPEDVRLSPHMYLATNSLQGPWWILNWPERVPGADEVLPPEPPAYRVLTGVVDGFGRTLAFHRAAEGDVAGAVTGVTDG
AGRRFHLVLTTQAQRAEVFRKQRATSLSSPAGPRSASSSLVFPDTLPAGTEYGADNGIRLEAVWLTHDPAYPDELPAAPL
ARYTYTASGELRAVYDRSGTQVRGFAYDAEHAGRMVAHHYAGRPESRYRYDDTGRVTELVNPEGLDYRFEYGQDRVTITD
SLNRREVLYTEGEGGLKRVVKKEHADGSITRSEYDEAGRLKAQTDAAGRRTEYSLHMASGAVTAVTGPDGRTVRYGYNSQ
RQVTSVTYPDGLRSSREYDEKGRLAAETSRSGETTRYSYDDPASELPTGIQDATGSTKQMAWSRYGQLLTFTDCSGYTTR
YEYDRYGQQIAVHREEGISTYSSYNPRGQLVSQKDAQGRETRYEYSAAGDLTAIVAPDGSRSEIQYDAWGKAVSTTQGGL
TRSMGYDAAGRITVLTNENGSQSTFRYDPVDRLTEQRGFDGRTQRYHYDLTGKLTQSEDEGLVTLWHYDASDRITHRTVN
GDPAEQWQYDEHGWLTTLSHTSEGHRVSVHYGYDDKGRLTGERQTVENPETGEMLWEHETGHAYSEQGLATRQEPDGLPP
VEWLTYGSGYLAGMKLGGTPLVEYMRDRLHRETARSFGGEAYELATAWNTSGQLRSRHLNLPQLDRDYDWNDNGQLIRIS
GPQESREYRYSDTGRLTGVHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKT
DRIPEGVIRMHDERTHHYHYDSQHRLVFHTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEETWYGW
DGDRLTTVQTQQTRIQTVYQPGSFTPLLRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEE
SQQWLAQCGLTAEQMAAQLEAEYIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGETSAQHLQQSLRLPGQ
QYDEESGLYYNRNRYYDPLQGRYITQDPIGLEGGWNLYQYPLNPIEHIDPLGLALDLNYYSPSDPIYKGSLNVREFPTGF
TVGGHGSPTSMSDDRIKKGSDLTIKQLASDIRANPKYHEGMPVVLFSCETGKGKNSFAQKLANELDATVIAPDEIIWIWP
DGNYAIMGQTARITIGGKDNGVFELVPDEKQPGDFHKFTPTGSK*

  Nucleotide sequence: 4215 bp    

>T6CP011392 NC_002655:267079-271293 [Escherichia coli O157:H7 str. EDL933] [PAAR]
ATGGGAGGAAAACCGGCGGCGCGGCAGGGTGACATGACCCGCAAGGGACTGGATATTGTGCAGGGTTCAGCAGGGGTGCT
GATAGGTGCGCCGACGGGCGTGGCCTGCTCGGTGTGTCCGGGAGGGATTACCTATGCTAACCCGGTGAACCCGGTGCTGG
GTGCGAAGGTGCTGCCGGGCGAGACGGACCTTGCGCTGCCCGGCCCGCTGCCGTTTATTCTTTCCCGCGCCTACAGCAGC
TACCGGACCAGAACACCCGCGCCGGTGGGGGTGTTTGGTCCCGGCTGGAAAGCGCCCTTCGATATCCGCTTACAGATACG
CGATGAAGGCCTGATACTCAACGACAACGGCGGCAGGAGCATTCACTTTGAGCCGCTGTTTCCCGGCGAGATAAGCTACA
GCCGCAGCGAGTCGTTCTGGCTGGCGCGGGGCGGGGTGGCGGAGCAGCACAGTTCGCAGCCGCTAAGCGCGCTCTGGCAG
GTGCTGCCGGAAGATGTTCGCCTGAGTCCGCATATGTACCTGGCGACAAACAGCCTTCAGGGGCCGTGGTGGATACTCAA
CTGGCCGGAGCGGGTGCCGGGGGCGGACGAGGTGCTGCCGCCGGAGCCGCCCGCATACCGGGTGCTGACGGGCGTGGTGG
ATGGCTTCGGGCGGACGCTGGCCTTTCACCGGGCGGCGGAGGGTGATGTGGCGGGCGCGGTGACGGGGGTGACGGACGGC
GCGGGCCGCCGTTTTCACCTGGTGCTGACCACACAGGCACAGCGGGCGGAAGTATTCCGTAAACAGCGCGCCACGTCTTT
ATCTTCCCCTGCCGGTCCCCGTTCTGCTTCCTCTTCTCTGGTTTTCCCCGACACGCTGCCCGCCGGTACAGAATACGGTG
CCGATAACGGTATCCGGCTGGAGGCGGTATGGCTGACACACGACCCGGCATACCCGGATGAACTGCCCGCCGCGCCGCTG
GCGCGCTACACGTACACGGCCAGCGGAGAACTGCGGGCGGTGTATGACCGCAGCGGGACGCAGGTGCGCGGGTTTGCTTA
TGATGCGGAGCACGCCGGGCGGATGGTGGCGCACCATTATGCGGGTAGGCCGGAGAGCCGCTACCGGTATGATGATACCG
GCCGGGTGACGGAGCTGGTCAACCCGGAGGGGCTGGACTACCGCTTTGAGTACGGGCAGGACCGTGTGACCATCACGGAC
AGCCTGAACCGGCGGGAGGTGCTGTACACGGAAGGCGAGGGTGGCCTGAAACGTGTTGTGAAGAAGGAACATGCGGACGG
GAGCATCACCCGCAGCGAGTATGATGAGGCGGGGAGGCTGAAGGCACAGACGGATGCGGCGGGACGGCGGACGGAGTACA
GCCTGCATATGGCGTCGGGTGCGGTGACAGCGGTGACGGGGCCGGACGGCAGGACGGTGCGGTATGGCTATAACAGCCAG
CGGCAGGTGACGTCAGTGACGTACCCGGACGGGCTGCGCAGCAGCCGGGAGTATGATGAGAAGGGAAGGCTGGCGGCGGA
GACCTCGCGCAGCGGAGAGACGACGCGGTACAGCTATGATGACCCGGCGAGTGAGCTGCCGACAGGGATACAGGACGCGA
CGGGCAGTACAAAACAGATGGCATGGAGCCGTTACGGTCAGCTGCTGACCTTTACGGACTGCTCGGGGTACACGACGCGG
TATGAGTATGACCGGTACGGTCAACAAATCGCCGTTCACCGGGAAGAAGGCATCAGCACTTACAGCAGTTATAACCCGCG
TGGCCAACTGGTCAGTCAGAAGGATGCGCAGGGGCGTGAAACCCGTTATGAGTACAGCGCCGCAGGCGACCTCACCGCTA
TCGTTGCCCCGGACGGCAGCCGCAGTGAGATACAGTATGATGCGTGGGGAAAGGCCGTCAGCACCACGCAGGGCGGTCTG
ACGCGCAGCATGGGGTATGACGCTGCCGGGCGCATCACCGTGCTGACCAACGAGAACGGCAGCCAGTCCACGTTCCGGTA
TGACCCGGTGGACAGGCTGACTGAACAGCGCGGTTTTGATGGCCGGACGCAACGTTACCACTATGACCTGACCGGAAAAC
TCACGCAGAGTGAAGACGAGGGGCTTGTCACCCTCTGGCACTACGATGCGTCGGACCGCATCACGCACCGGACGGTGAAC
GGCGACCCGGCAGAGCAGTGGCAGTATGATGAGCACGGGTGGCTAACCACCCTCAGCCATACCAGTGAAGGCCACCGGGT
GTCGGTCCACTACGGCTATGACGATAAAGGCCGCCTGACGGGTGAACGGCAGACGGTGGAGAACCCGGAGACGGGGGAGA
TGCTGTGGGAGCATGAGACGGGGCACGCGTACAGCGAACAGGGGCTGGCGACCCGTCAGGAGCCGGACGGTCTGCCGCCG
GTAGAGTGGCTGACGTATGGCAGCGGTTATCTTGCGGGGATGAAGCTGGGCGGAACGCCACTGGTCGAGTACATGCGGGA
CCGGCTGCACCGTGAGACGGCCCGCAGCTTCGGCGGGGAGGCATATGAACTTGCCACCGCCTGGAATACCAGCGGCCAGC
TCCGGAGCAGGCACCTGAACCTTCCGCAGCTTGACCGTGACTACGACTGGAACGACAACGGACAGCTAATCCGCATCAGC
GGCCCGCAGGAGAGCCGGGAGTACCGTTACAGTGACACGGGAAGGCTGACGGGCGTCCACACCACGGCAGCGAACCTGGA
TATCGATATCCCGTATGCAACGGACCCGGCAGGAAACCGGCTGCCGGACCCGGAACTGCACCCGGACAGCACCCTCACGG
CATGGCCGGATAACCGCATCGCGGAAGATGCGCACTATGTCTACCGCTACGATGAATACGGCAGGCTGGCGGAGAAGACG
GACCGCATCCCGGAAGGGGTTATCCGGATGCACGACGAGCGCACCCACCACTATCACTACGACAGCCAGCACCGCCTGGT
GTTCCACACGCGGATACAGCACGGCGAACCACAGGTGGAGAGCCGGTACCTCTATGACCCGCTGGGCCGCCGGACGGGAA
AACGGGTGTGGCGGCGGGAGCGTGACCTGACGGGGTGGATGTCGCTGTCGCGTAAACCGGAGGAGACCTGGTACGGGTGG
GACGGTGACAGGCTGACCACTGTACAGACCCAACAGACAAGAATCCAGACGGTATACCAGCCGGGAAGCTTCACGCCGCT
CCTGAGAATCGAAACAGAGAATGGTGAACAGGCGAAGGCGCGGCACCGTAGCCTGGCGGAGGTGTTGCAGGAGGACACGG
GTGTGACGCTACCGGCGGAGCTGGCGGTGATGCTGGGAAGGCTGGAGCGGGAGCTGCGGCAGGGCAGCGTGAGTGAAGAA
AGCCAGCAGTGGCTTGCGCAGTGCGGGCTGACGGCGGAGCAGATGGCCGCGCAGCTGGAGGCGGAATACATCCCGGAGAG
GAAACTTCATCTTTACCACTGCGACCACCGGGGACTGCCGCTGGCGCTCATCAGCCCGGAAGGGGAAACGGCGTGGCAGG
GGGAGTATGACGAGTGGGGAAACCTGCTGGGCGAAACCAGCGCGCAGCACCTTCAACAGTCACTCCGTCTGCCGGGGCAG
CAGTATGATGAGGAGTCGGGGCTGTACTACAACCGCAACCGGTACTATGATCCGTTGCAGGGGAGATATATCACCCAGGA
CCCGATAGGGCTGGAGGGGGGATGGAACCTGTATCAGTACCCACTCAATCCTATTGAACATATAGATCCGTTGGGGTTAG
CACTTGATTTGAATTATTATTCTCCGTCAGATCCTATATATAAAGGTTCTCTTAATGTAAGGGAATTTCCAACGGGTTTT
ACAGTTGGAGGTCATGGTTCGCCTACATCTATGAGTGATGACAGAATCAAAAAAGGAAGTGATCTGACAATAAAACAATT
AGCTAGCGACATAAGAGCGAATCCTAAATATCATGAAGGTATGCCTGTAGTCTTGTTTTCCTGCGAAACAGGAAAAGGCA
AAAATTCATTTGCACAGAAACTAGCTAACGAACTTGATGCTACAGTGATTGCTCCTGATGAAATAATATGGATTTGGCCG
GATGGAAACTATGCTATTATGGGGCAAACAGCTAGGATAACAATAGGCGGTAAGGACAACGGGGTGTTTGAATTGGTGCC
AGACGAGAAACAACCAGGGGACTTTCATAAGTTTACACCTACAGGAAGCAAATAG