Detailed information of component protein
Summary
| Component ID | T6CP011385 |
| Component protein type | PAAR |
| T6SS ID (Type) | T6SS00907  (Type iii) |
| Strain | Bacteroides fragilis NCTC 9343 |
| Replicon | chromosome |
| Sequence | Protein sequence (223 a.a.); Nucleotide sequence (669 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF9343_RS09410 |
| Coordinate (Strand) | 2356980..2357648 (-) |
| NCBI ID | 499302024 |
| RefSeq | NC_003228 |
| Uniprot ID | A0A016GFJ0_BACFG |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| PAAR_motif | PF05488.15 | 4.9e-16 | 17..85 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-222 | MKQIVTINLNHICPMVTGVTPHIGGPIIGPGCPGVMVNGVPISVMGDMCVCCGPPDTIVQGEPGILVNGKPIVLQGCMTAHGGIIPAGVPGVTVSSASPIEPITMNHVSPKRNRFLAAISGNNLQEAIENQNALQKKMLEEEPMIFNVHWEKEDIHIAESHINKKVTVNADTIGFKDGETVKFVITPEAIDTANGEQVEDIELTGTVNNNHVTVEWIVELKK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.5809 | - | - |
Protein sequence: 223 a.a.
>T6CP011385 NC_003228:c2357648-2356980 [Bacteroides fragilis NCTC 9343] [PAAR]
MKQIVTINLNHICPMVTGVTPHIGGPIIGPGCPGVMVNGVPISVMGDMCVCCGPPDTIVQGEPGILVNGKPIVLQGCMTA
HGGIIPAGVPGVTVSSASPIEPITMNHVSPKRNRFLAAISGNNLQEAIENQNALQKKMLEEEPMIFNVHWEKEDIHIAES
HINKKVTVNADTIGFKDGETVKFVITPEAIDTANGEQVEDIELTGTVNNNHVTVEWIVELKK*
MKQIVTINLNHICPMVTGVTPHIGGPIIGPGCPGVMVNGVPISVMGDMCVCCGPPDTIVQGEPGILVNGKPIVLQGCMTA
HGGIIPAGVPGVTVSSASPIEPITMNHVSPKRNRFLAAISGNNLQEAIENQNALQKKMLEEEPMIFNVHWEKEDIHIAES
HINKKVTVNADTIGFKDGETVKFVITPEAIDTANGEQVEDIELTGTVNNNHVTVEWIVELKK*
Nucleotide sequence: 669 bp
>T6CP011385 NC_003228:c2357648-2356980 [Bacteroides fragilis NCTC 9343] [PAAR]
ATGAAACAAATCGTTACTATAAATTTAAATCATATTTGCCCGATGGTAACAGGGGTGACACCTCATATTGGAGGGCCTAT
TATCGGTCCAGGATGCCCCGGTGTAATGGTTAATGGAGTTCCTATATCTGTTATGGGTGATATGTGTGTATGTTGTGGTC
CGCCCGACACTATTGTACAAGGAGAACCGGGAATCTTGGTTAATGGTAAACCTATCGTATTACAAGGCTGTATGACTGCT
CACGGAGGAATTATCCCTGCGGGAGTACCCGGAGTAACAGTAAGCAGTGCCAGTCCTATAGAACCAATCACGATGAATCA
TGTATCACCGAAAAGGAATAGATTTTTGGCTGCGATTTCTGGCAATAACTTGCAAGAAGCCATCGAAAATCAGAATGCTC
TGCAAAAAAAAATGTTAGAGGAGGAACCTATGATATTTAATGTGCATTGGGAAAAAGAAGATATACATATCGCAGAAAGT
CATATCAATAAAAAAGTTACAGTAAACGCTGATACTATAGGATTTAAGGATGGAGAAACTGTGAAATTTGTAATTACCCC
TGAGGCTATAGATACAGCGAATGGAGAACAGGTCGAGGATATTGAGTTAACAGGAACTGTTAACAATAACCATGTTACTG
TCGAATGGATTGTAGAATTAAAAAAATGA
ATGAAACAAATCGTTACTATAAATTTAAATCATATTTGCCCGATGGTAACAGGGGTGACACCTCATATTGGAGGGCCTAT
TATCGGTCCAGGATGCCCCGGTGTAATGGTTAATGGAGTTCCTATATCTGTTATGGGTGATATGTGTGTATGTTGTGGTC
CGCCCGACACTATTGTACAAGGAGAACCGGGAATCTTGGTTAATGGTAAACCTATCGTATTACAAGGCTGTATGACTGCT
CACGGAGGAATTATCCCTGCGGGAGTACCCGGAGTAACAGTAAGCAGTGCCAGTCCTATAGAACCAATCACGATGAATCA
TGTATCACCGAAAAGGAATAGATTTTTGGCTGCGATTTCTGGCAATAACTTGCAAGAAGCCATCGAAAATCAGAATGCTC
TGCAAAAAAAAATGTTAGAGGAGGAACCTATGATATTTAATGTGCATTGGGAAAAAGAAGATATACATATCGCAGAAAGT
CATATCAATAAAAAAGTTACAGTAAACGCTGATACTATAGGATTTAAGGATGGAGAAACTGTGAAATTTGTAATTACCCC
TGAGGCTATAGATACAGCGAATGGAGAACAGGTCGAGGATATTGAGTTAACAGGAACTGTTAACAATAACCATGTTACTG
TCGAATGGATTGTAGAATTAAAAAAATGA