Detailed information of component protein
Summary
External database links
Locus tag (Gene) | BTH_RS00665 |
Coordinate (Strand) | 153966..154235 (+) |
NCBI ID | WP_004523693.1 |
RefSeq | NC_007650 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
PAAR_motif | PF05488.15 | 1.3e-14 | 8..80 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-24 | MTIPAARVGDAIGHGGVLVTGSGD |
Transmembrane helix | 25-47 | VFMNGIPAGFVAGSVAVCALHAS |
Inside | 48-58 | AQAVVAASGTV |
Transmembrane helix | 59-81 | FINRLPAAFVGGVTSCGAPIVSG |
Outside | 82-89 | SPDVMIGS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.7877 | - | - |
Protein sequence: 90 a.a.
>T6CP011370 NC_007650:153966-154235 [Burkholderia thailandensis E264] [PAAR]
MTIPAARVGDAIGHGGVLVTGSGDVFMNGIPAGFVAGSVAVCALHASAQAVVAASGTVFINRLPAAFVGGVTSCGAPIVS
GSPDVMIGS*
MTIPAARVGDAIGHGGVLVTGSGDVFMNGIPAGFVAGSVAVCALHASAQAVVAASGTVFINRLPAAFVGGVTSCGAPIVS
GSPDVMIGS*
Nucleotide sequence: 270 bp
>T6CP011370 NC_007650:153966-154235 [Burkholderia thailandensis E264] [PAAR]
ATGACAATCCCGGCAGCAAGAGTGGGAGATGCGATCGGACATGGCGGCGTTCTCGTCACCGGCTCAGGTGACGTCTTCAT
GAACGGCATTCCTGCGGGATTCGTCGCCGGCAGCGTCGCGGTGTGCGCGCTGCACGCGTCCGCGCAGGCGGTTGTCGCCG
CATCGGGAACGGTATTCATCAATCGCCTGCCGGCAGCGTTTGTCGGCGGCGTGACGTCGTGTGGTGCGCCAATCGTTTCC
GGCTCGCCCGACGTAATGATCGGCTCATAA
ATGACAATCCCGGCAGCAAGAGTGGGAGATGCGATCGGACATGGCGGCGTTCTCGTCACCGGCTCAGGTGACGTCTTCAT
GAACGGCATTCCTGCGGGATTCGTCGCCGGCAGCGTCGCGGTGTGCGCGCTGCACGCGTCCGCGCAGGCGGTTGTCGCCG
CATCGGGAACGGTATTCATCAATCGCCTGCCGGCAGCGTTTGTCGGCGGCGTGACGTCGTGTGGTGCGCCAATCGTTTCC
GGCTCGCCCGACGTAATGATCGGCTCATAA