Detailed information of component protein
Summary

External database links
Locus tag (Gene) | BTH_RS27270 |
Coordinate (Strand) | 3401194..3402129 (+) |
NCBI ID | WP_009888604.1 |
RefSeq | NC_007651 |
Uniprot ID | Q2SUD6_BURTA, A0A7X3J7F1_BURTH |
KEGG ID | bte:BTH_I2956 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
OmpA | PF00691.22 | 4e-23 | 209..303 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-311 | MTKPRLPSRRASRFALTLAALALGGALGGAARADNVGPATVTPIDAGGVSVKSTPLAAPGAAANGTGTGAIVSSPPPANAAPGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEVGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEVHNEAQRQQLASDMANALNPTYMIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRTILDQMAGALAKMPNRTVEIIGHTDNSGNRASNIALSQSRADAVKGYLVTKGIASQQLTTTGVGPDQPIASNDSADGRARNRRIEFRAGQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
SP(Sec/SPI) | 0.6858 | pos: 33-34. ARA-DN. | MTKPRLPSRRASRFALTLAALALGGALGGAARA |
Protein sequence: 312 a.a.
>T6CP011368 NC_007651:3401194-3402129 [Burkholderia thailandensis E264] [TagL]
MTKPRLPSRRASRFALTLAALALGGALGGAARADNVGPATVTPIDAGGVSVKSTPLAAPGAAANGTGTGAIVSSPPPANA
APGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEVGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGE
VHNEAQRQQLASDMANALNPTYMIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRTILDQMAGALAKMPNRTVE
IIGHTDNSGNRASNIALSQSRADAVKGYLVTKGIASQQLTTTGVGPDQPIASNDSADGRARNRRIEFRAGQ*
MTKPRLPSRRASRFALTLAALALGGALGGAARADNVGPATVTPIDAGGVSVKSTPLAAPGAAANGTGTGAIVSSPPPANA
APGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEVGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGE
VHNEAQRQQLASDMANALNPTYMIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRTILDQMAGALAKMPNRTVE
IIGHTDNSGNRASNIALSQSRADAVKGYLVTKGIASQQLTTTGVGPDQPIASNDSADGRARNRRIEFRAGQ*
Nucleotide sequence: 936 bp
>T6CP011368 NC_007651:3401194-3402129 [Burkholderia thailandensis E264] [TagL]
ATGACGAAGCCGCGCCTGCCCTCCCGCCGCGCTTCCCGTTTCGCGCTCACGCTCGCCGCGCTCGCGCTCGGCGGCGCGCT
CGGCGGCGCCGCGCGCGCCGACAACGTCGGCCCCGCCACCGTCACGCCGATCGACGCGGGCGGCGTATCCGTGAAATCGA
CGCCGCTCGCGGCGCCCGGCGCCGCGGCGAACGGCACGGGCACGGGCGCGATCGTGTCGTCGCCGCCGCCCGCGAACGCG
GCTCCGGGCCAGGTCGTCGCCGGCGGCAAGGTCGCCGACGAGGCGACGAAGGCCGCCGTGCTGCAGCGCCTGCGCGACAC
GTACGGCGCCGCGAACGTCGTCGACCAGATCGAAGTCGGCAACGTCGCGACGCCGCCGAACTGGTCCGCGAACGTCCAGA
AGCTGATCGGCCCGCAACTGAAGCAGATCAGCAAAGGACAGCTGAAGATCGACGGCACGCAGATCGACGTGAAGGGTGAG
GTGCACAACGAGGCGCAGCGGCAGCAGCTCGCGAGCGACATGGCCAACGCGCTGAACCCGACCTACATGATCAAGAACGG
GCTGCGCGTGAGCGCGTCCGAGCAGGGTCTGCTCGACCAGACGCTCGCGAACCGCACGATCGAGTTCGAGACCGGCAGCG
CGACGCTCACGCCGCAAGGCCGCACGATCCTCGACCAGATGGCGGGCGCGCTCGCGAAGATGCCGAACCGGACGGTCGAG
ATCATCGGCCACACCGACAATTCGGGCAATCGCGCGTCGAACATCGCGCTCAGCCAGTCGCGCGCGGACGCGGTGAAGGG
CTACTTGGTGACGAAGGGCATCGCGTCGCAACAGCTGACGACGACGGGCGTCGGCCCCGACCAGCCGATCGCGTCGAACG
ACTCGGCCGACGGGCGCGCGCGCAATCGCCGGATCGAGTTCCGCGCGGGGCAGTAA
ATGACGAAGCCGCGCCTGCCCTCCCGCCGCGCTTCCCGTTTCGCGCTCACGCTCGCCGCGCTCGCGCTCGGCGGCGCGCT
CGGCGGCGCCGCGCGCGCCGACAACGTCGGCCCCGCCACCGTCACGCCGATCGACGCGGGCGGCGTATCCGTGAAATCGA
CGCCGCTCGCGGCGCCCGGCGCCGCGGCGAACGGCACGGGCACGGGCGCGATCGTGTCGTCGCCGCCGCCCGCGAACGCG
GCTCCGGGCCAGGTCGTCGCCGGCGGCAAGGTCGCCGACGAGGCGACGAAGGCCGCCGTGCTGCAGCGCCTGCGCGACAC
GTACGGCGCCGCGAACGTCGTCGACCAGATCGAAGTCGGCAACGTCGCGACGCCGCCGAACTGGTCCGCGAACGTCCAGA
AGCTGATCGGCCCGCAACTGAAGCAGATCAGCAAAGGACAGCTGAAGATCGACGGCACGCAGATCGACGTGAAGGGTGAG
GTGCACAACGAGGCGCAGCGGCAGCAGCTCGCGAGCGACATGGCCAACGCGCTGAACCCGACCTACATGATCAAGAACGG
GCTGCGCGTGAGCGCGTCCGAGCAGGGTCTGCTCGACCAGACGCTCGCGAACCGCACGATCGAGTTCGAGACCGGCAGCG
CGACGCTCACGCCGCAAGGCCGCACGATCCTCGACCAGATGGCGGGCGCGCTCGCGAAGATGCCGAACCGGACGGTCGAG
ATCATCGGCCACACCGACAATTCGGGCAATCGCGCGTCGAACATCGCGCTCAGCCAGTCGCGCGCGGACGCGGTGAAGGG
CTACTTGGTGACGAAGGGCATCGCGTCGCAACAGCTGACGACGACGGGCGTCGGCCCCGACCAGCCGATCGCGTCGAACG
ACTCGGCCGACGGGCGCGCGCGCAATCGCCGGATCGAGTTCCGCGCGGGGCAGTAA