Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PA1665 |
Coordinate (Strand) | 1815153..1816346 (+) |
NCBI ID | NP_250356.1 |
RefSeq | NC_002516 |
Uniprot ID | Q9I360_PSEAE |
KEGG ID | pae:PA1665 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
FHA | PF00498.28 | 1.7e-12 | 30..96 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-397 | MELVLEMLSAKQFVPTELCSKTFGRNGGLIGRGGECDWAIPDRKRHLSKQHARVSYRNGAFYLTDTSSNGIRAGNGSRLPHGEPQRIEQDSVFLLGDFEIRARLLREPDELAMDVGRPQPAGSIIPDDAFLALDPLQALDQDGADAYELDDLSAIAQPSHEAGARADYARIDMESLVVPELVPAPAAPQEPVESPPPERDEAFWQRFGQALGVDLEGLDGAAREALAIDAAGLLRQCIGGLQQSLRTRSELKNELRLSLSTLRDTGKNPLRFSADAGEALGHLLRDGKPGQLSGEQAVARSFRDLQAHQVALLGASRAAVRATLEHFSPQQLALRFERDGRRPLLATSGSRWRAYGRYHQSLCQDDDWSERLLARDFAQAYEEQVRLISTLYTEHQG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9708 | - | - |
Protein sequence: 398 a.a.
>T6CP011362 NC_002516:1815153-1816346 [Pseudomonas aeruginosa PAO1] [FHA]
MELVLEMLSAKQFVPTELCSKTFGRNGGLIGRGGECDWAIPDRKRHLSKQHARVSYRNGAFYLTDTSSNGIRAGNGSRLP
HGEPQRIEQDSVFLLGDFEIRARLLREPDELAMDVGRPQPAGSIIPDDAFLALDPLQALDQDGADAYELDDLSAIAQPSH
EAGARADYARIDMESLVVPELVPAPAAPQEPVESPPPERDEAFWQRFGQALGVDLEGLDGAAREALAIDAAGLLRQCIGG
LQQSLRTRSELKNELRLSLSTLRDTGKNPLRFSADAGEALGHLLRDGKPGQLSGEQAVARSFRDLQAHQVALLGASRAAV
RATLEHFSPQQLALRFERDGRRPLLATSGSRWRAYGRYHQSLCQDDDWSERLLARDFAQAYEEQVRLISTLYTEHQG*
MELVLEMLSAKQFVPTELCSKTFGRNGGLIGRGGECDWAIPDRKRHLSKQHARVSYRNGAFYLTDTSSNGIRAGNGSRLP
HGEPQRIEQDSVFLLGDFEIRARLLREPDELAMDVGRPQPAGSIIPDDAFLALDPLQALDQDGADAYELDDLSAIAQPSH
EAGARADYARIDMESLVVPELVPAPAAPQEPVESPPPERDEAFWQRFGQALGVDLEGLDGAAREALAIDAAGLLRQCIGG
LQQSLRTRSELKNELRLSLSTLRDTGKNPLRFSADAGEALGHLLRDGKPGQLSGEQAVARSFRDLQAHQVALLGASRAAV
RATLEHFSPQQLALRFERDGRRPLLATSGSRWRAYGRYHQSLCQDDDWSERLLARDFAQAYEEQVRLISTLYTEHQG*
Nucleotide sequence: 1194 bp
>T6CP011362 NC_002516:1815153-1816346 [Pseudomonas aeruginosa PAO1] [FHA]
ATGGAACTGGTATTGGAAATGCTCAGCGCCAAGCAATTCGTACCGACGGAGCTATGCAGCAAGACCTTCGGCAGGAACGG
CGGCCTCATCGGCCGCGGCGGTGAGTGCGATTGGGCGATTCCCGATCGCAAGCGGCACCTGTCCAAGCAGCATGCGCGGG
TCAGCTATCGCAACGGCGCGTTCTACCTGACCGACACCAGCAGCAACGGCATCCGCGCCGGCAACGGCAGCCGCCTGCCG
CATGGCGAGCCGCAGCGCATCGAGCAGGACAGCGTCTTCCTGCTCGGCGACTTCGAGATCCGCGCGCGGTTGCTGCGCGA
GCCCGACGAGCTCGCCATGGACGTCGGGCGGCCGCAGCCGGCGGGCAGCATCATTCCGGACGATGCCTTCCTGGCCCTCG
ATCCGTTGCAGGCGCTCGACCAGGACGGTGCAGATGCCTACGAACTCGACGACCTGAGCGCGATCGCCCAGCCCAGTCAT
GAGGCCGGGGCGCGTGCGGACTACGCGCGGATCGACATGGAAAGCCTGGTCGTACCGGAGCTGGTGCCCGCCCCGGCGGC
TCCGCAGGAACCCGTGGAAAGTCCGCCTCCGGAACGCGACGAAGCCTTCTGGCAGCGTTTCGGCCAGGCGCTCGGAGTGG
ACCTCGAAGGCCTCGACGGCGCTGCGCGCGAAGCGCTGGCGATCGACGCCGCCGGTTTGCTGCGGCAGTGCATCGGCGGC
TTGCAGCAGAGCCTGCGGACCCGCAGCGAACTGAAGAACGAACTGCGCCTGTCGCTGAGCACATTGCGCGATACCGGCAA
GAATCCCTTGCGCTTCAGCGCCGATGCCGGCGAGGCGCTGGGTCATCTGCTACGGGATGGCAAGCCTGGCCAGTTGAGTG
GCGAACAGGCCGTCGCACGCAGTTTCCGCGACCTCCAGGCACACCAGGTGGCGCTACTCGGCGCCAGCCGGGCGGCGGTG
CGCGCGACCCTCGAGCATTTCTCGCCGCAGCAGCTGGCCCTGCGTTTCGAGCGCGACGGTCGCCGGCCGTTGCTGGCCAC
CTCGGGCAGCCGCTGGCGTGCCTATGGTCGCTACCACCAGTCGCTATGCCAGGACGACGATTGGAGCGAGCGTCTGTTGG
CGCGTGATTTCGCCCAGGCCTACGAAGAGCAGGTTCGCCTGATTTCCACCCTCTACACCGAGCACCAAGGATGA
ATGGAACTGGTATTGGAAATGCTCAGCGCCAAGCAATTCGTACCGACGGAGCTATGCAGCAAGACCTTCGGCAGGAACGG
CGGCCTCATCGGCCGCGGCGGTGAGTGCGATTGGGCGATTCCCGATCGCAAGCGGCACCTGTCCAAGCAGCATGCGCGGG
TCAGCTATCGCAACGGCGCGTTCTACCTGACCGACACCAGCAGCAACGGCATCCGCGCCGGCAACGGCAGCCGCCTGCCG
CATGGCGAGCCGCAGCGCATCGAGCAGGACAGCGTCTTCCTGCTCGGCGACTTCGAGATCCGCGCGCGGTTGCTGCGCGA
GCCCGACGAGCTCGCCATGGACGTCGGGCGGCCGCAGCCGGCGGGCAGCATCATTCCGGACGATGCCTTCCTGGCCCTCG
ATCCGTTGCAGGCGCTCGACCAGGACGGTGCAGATGCCTACGAACTCGACGACCTGAGCGCGATCGCCCAGCCCAGTCAT
GAGGCCGGGGCGCGTGCGGACTACGCGCGGATCGACATGGAAAGCCTGGTCGTACCGGAGCTGGTGCCCGCCCCGGCGGC
TCCGCAGGAACCCGTGGAAAGTCCGCCTCCGGAACGCGACGAAGCCTTCTGGCAGCGTTTCGGCCAGGCGCTCGGAGTGG
ACCTCGAAGGCCTCGACGGCGCTGCGCGCGAAGCGCTGGCGATCGACGCCGCCGGTTTGCTGCGGCAGTGCATCGGCGGC
TTGCAGCAGAGCCTGCGGACCCGCAGCGAACTGAAGAACGAACTGCGCCTGTCGCTGAGCACATTGCGCGATACCGGCAA
GAATCCCTTGCGCTTCAGCGCCGATGCCGGCGAGGCGCTGGGTCATCTGCTACGGGATGGCAAGCCTGGCCAGTTGAGTG
GCGAACAGGCCGTCGCACGCAGTTTCCGCGACCTCCAGGCACACCAGGTGGCGCTACTCGGCGCCAGCCGGGCGGCGGTG
CGCGCGACCCTCGAGCATTTCTCGCCGCAGCAGCTGGCCCTGCGTTTCGAGCGCGACGGTCGCCGGCCGTTGCTGGCCAC
CTCGGGCAGCCGCTGGCGTGCCTATGGTCGCTACCACCAGTCGCTATGCCAGGACGACGATTGGAGCGAGCGTCTGTTGG
CGCGTGATTTCGCCCAGGCCTACGAAGAGCAGGTTCGCCTGATTTCCACCCTCTACACCGAGCACCAAGGATGA