Detailed information of component protein


Summary

Component ID T6CP011348
Component protein type PAAR
T6SS ID (Type) T6SS00789 experimental (Type i3)
Strain Salmonella enterica GIFU10007
Replicon chromosome
Sequence Protein sequence (1355 a.a.); Nucleotide sequence (4065 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 5536..9600 (-)
NCBI ID AEC05373.1
GenBank JF766712
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF6531 PF20148.1 8.4e-22 224..296
PAAR_motif PF05488.15 3.7e-14 72..138
RHS_repeat PF05593.16 1.4e-10 582..619
RHS PF03527.16 2.1e-09 1146..1177
AHH PF14412.8 7e-08 1247..1332
RHS_repeat PF05593.16 3.1e-07 624..660
RHS_repeat PF05593.16 1.5e-06 518..555
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-16 MYEAARVDDPIYHTSA
Transmembrane helix 17-39 LAGFLIGAIIGIAIIALAAFAFF
Outside 40-1354 SCGFLAGLILGFMADQIASGVLQLGEAIGRSIHHTAGKILTGSENVSTNSRPAARAVLSTVKCDNHIAEKRIAQGSGNIYINSQPAARKDDHTECDAVVEDGSPNVFLGGGTQTVLEISSEIPDWLRKVVDVLFVVASLLGGLAGAWRQAAKLGTKFGTKCAAKFIGGELTGMAVSEAISGLFSNPVDVTTGQKILLPETDFTLPGRLPVTCSRFYASHLETVGLLGQGWRLNWETSLREDDEHITLTGVQGRELRYPKMMLTPGHQIFGPKEQLYLSRLHDGRYVLHYTDRSYYVFGDFDSDGMAYLLFMETPHRQRIVFGHEGGRLVRIASSSGHHLLLHRTQTPAGERLSRIELVQGGTCGNLVEYRYDDNGQLTGVVNRAGTQVRQFAYENGLMTAHSNAAGFTCRYRWQELDGAPRVTEHDTSDGEHYRFDYDFAAGTTTVTGRQGESWQWWYDRETYITAHRTPGGGMYRFTYNEDHFPVNIGLPGGRTVAYEYDIQNRVVKTTDPEGRVTQTQWNGEFDEITRTALDDDAVWKTQYNAHGQPVQETDPEGRVTQYAYDEQGQMCSRTDAAGGTVVTAFDSRGQMTRYTDCSGRSTGYDHDEDGNLTRVTDAEGKVVRISYNRLGLPETVNSPGKQQDRYTWNALGLMSSHRRITGSVESWRYTPRGLLAAHTDEEKRETRWQYTPEGRVTALTNGNGAQYRFSHDADGRLMREVRPDGLSRTFILDDSGYLTAIQTTGTQGGVRRETQQRDALGLRLRTENEHGQRTFSYNRLDQITAVTLTPTEAGQQQHRMQADTVRFEYDRSGWLTAEHAGNGSICYQRDALGNPTDITLPDGQHLTHLYYGSGHLLQTALDGLTVSEYERDSLHRQIMRTQGQLATYSGYDDDGLLSWQRSLAPGSAPVLPGQRPARQGCVTSRDYYWNNHGEVGTIDDGLRGSVVYSYDRSGYLTGRSGQMYDHDRYYYDKAGNLLDNEGQGPVMNNRLPGCGRDRYGYNEWGELTTRRDQQLEWNAQGQLTRVISGNTETHYGYDALGRRIRKATYGRHTGHTARSRTDFVWEGFRLLQENVQQQGWRTYVYDAEQPYTPVASVTGRGESRQVWYYHTDVTGTPQEVTAADGTLVWAGYIRGFGENAADISNSGAYFHQPLRLPGQYFDDETGLHYNLFRYYAPECGRFVSQDPIGLRGGLNLYAYCPNPLTWIDPLGLDLHHIIPQEVWKTFKTDLKKVTGYVQNVTKKAMDVTNLIDLDKPFHGNHPAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINAAKASGKNLNDYFKGGC


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 1355 a.a.    

>T6CP011348 JF766712:c9600-5536 [Salmonella enterica] [PAAR]
MYEAARVDDPIYHTSALAGFLIGAIIGIAIIALAAFAFFSCGFLAGLILGFMADQIASGVLQLGEAIGRSIHHTAGKILT
GSENVSTNSRPAARAVLSTVKCDNHIAEKRIAQGSGNIYINSQPAARKDDHTECDAVVEDGSPNVFLGGGTQTVLEISSE
IPDWLRKVVDVLFVVASLLGGLAGAWRQAAKLGTKFGTKCAAKFIGGELTGMAVSEAISGLFSNPVDVTTGQKILLPETD
FTLPGRLPVTCSRFYASHLETVGLLGQGWRLNWETSLREDDEHITLTGVQGRELRYPKMMLTPGHQIFGPKEQLYLSRLH
DGRYVLHYTDRSYYVFGDFDSDGMAYLLFMETPHRQRIVFGHEGGRLVRIASSSGHHLLLHRTQTPAGERLSRIELVQGG
TCGNLVEYRYDDNGQLTGVVNRAGTQVRQFAYENGLMTAHSNAAGFTCRYRWQELDGAPRVTEHDTSDGEHYRFDYDFAA
GTTTVTGRQGESWQWWYDRETYITAHRTPGGGMYRFTYNEDHFPVNIGLPGGRTVAYEYDIQNRVVKTTDPEGRVTQTQW
NGEFDEITRTALDDDAVWKTQYNAHGQPVQETDPEGRVTQYAYDEQGQMCSRTDAAGGTVVTAFDSRGQMTRYTDCSGRS
TGYDHDEDGNLTRVTDAEGKVVRISYNRLGLPETVNSPGKQQDRYTWNALGLMSSHRRITGSVESWRYTPRGLLAAHTDE
EKRETRWQYTPEGRVTALTNGNGAQYRFSHDADGRLMREVRPDGLSRTFILDDSGYLTAIQTTGTQGGVRRETQQRDALG
LRLRTENEHGQRTFSYNRLDQITAVTLTPTEAGQQQHRMQADTVRFEYDRSGWLTAEHAGNGSICYQRDALGNPTDITLP
DGQHLTHLYYGSGHLLQTALDGLTVSEYERDSLHRQIMRTQGQLATYSGYDDDGLLSWQRSLAPGSAPVLPGQRPARQGC
VTSRDYYWNNHGEVGTIDDGLRGSVVYSYDRSGYLTGRSGQMYDHDRYYYDKAGNLLDNEGQGPVMNNRLPGCGRDRYGY
NEWGELTTRRDQQLEWNAQGQLTRVISGNTETHYGYDALGRRIRKATYGRHTGHTARSRTDFVWEGFRLLQENVQQQGWR
TYVYDAEQPYTPVASVTGRGESRQVWYYHTDVTGTPQEVTAADGTLVWAGYIRGFGENAADISNSGAYFHQPLRLPGQYF
DDETGLHYNLFRYYAPECGRFVSQDPIGLRGGLNLYAYCPNPLTWIDPLGLDLHHIIPQEVWKTFKTDLKKVTGYVQNVT
KKAMDVTNLIDLDKPFHGNHPAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINAAKASGKNLNDYFKGGC*

  Nucleotide sequence: 4065 bp    

>T6CP011348 JF766712:c9600-5536 [Salmonella enterica] [PAAR]
ATGTATGAAGCAGCCCGTGTGGATGACCCTATCTACCACACCAGTGCGCTCGCCGGGTTTCTTATCGGCGCTATCATCGG
CATCGCCATTATCGCGCTTGCCGCCTTTGCCTTCTTTAGCTGCGGTTTTCTTGCCGGGCTGATTCTGGGTTTTATGGCCG
ATCAAATAGCCTCCGGGGTATTGCAACTGGGCGAGGCCATCGGGCGCTCCATCCACCACACGGCAGGAAAAATCCTCACC
GGTTCGGAGAATGTCAGCACCAACAGTCGCCCGGCGGCGCGCGCGGTACTGAGTACGGTGAAATGCGATAACCATATCGC
AGAAAAACGCATCGCCCAGGGTTCCGGCAATATTTACATCAACAGCCAGCCTGCCGCCCGTAAGGATGACCATACCGAAT
GCGATGCGGTGGTTGAAGACGGTTCGCCGAATGTGTTTCTCGGCGGCGGCACACAGACGGTACTGGAAATCAGTTCTGAA
ATTCCGGACTGGCTGCGCAAGGTGGTGGATGTATTGTTTGTCGTGGCGAGTCTGCTCGGCGGGCTGGCCGGGGCGTGGCG
GCAGGCGGCAAAGCTGGGGACGAAATTTGGCACTAAATGTGCCGCTAAGTTTATCGGCGGGGAGCTTACCGGGATGGCCG
TGAGTGAGGCTATCAGCGGGCTGTTCAGCAATCCGGTGGATGTGACCACCGGGCAGAAAATCCTGCTGCCGGAAACGGAC
TTCACCCTGCCCGGTCGCCTGCCGGTCACCTGCTCGCGTTTTTACGCCAGCCACCTGGAAACCGTGGGACTGTTGGGACA
GGGCTGGCGGCTGAACTGGGAAACCAGCCTGCGCGAGGACGATGAACACATCACGCTGACCGGCGTACAGGGGCGGGAAC
TGCGTTACCCGAAAATGATGCTGACGCCCGGCCACCAGATATTTGGCCCGAAAGAACAGTTATACCTCAGCCGCCTGCAT
GACGGGCGTTACGTGCTGCATTACACCGATCGCAGCTATTACGTATTTGGTGATTTTGACAGTGACGGCATGGCATACCT
GCTGTTTATGGAGACGCCGCACCGCCAGCGCATTGTCTTCGGGCACGAAGGAGGCAGACTGGTACGGATAGCCTCCAGCA
GCGGGCATCACCTGTTACTGCACCGCACACAGACCCCGGCAGGGGAGCGGCTGTCGCGAATTGAACTGGTGCAGGGCGGC
ACCTGTGGCAATCTGGTGGAGTACCGGTATGACGATAACGGTCAACTGACCGGCGTGGTGAACCGGGCGGGAACGCAGGT
GCGGCAGTTTGCTTATGAAAACGGGCTGATGACGGCGCACAGCAATGCGGCAGGGTTCACCTGCCGCTACCGCTGGCAGG
AACTCGACGGCGCGCCGCGCGTGACGGAGCACGACACCAGTGACGGTGAACATTACCGCTTTGACTATGATTTTGCCGCA
GGCACCACCACCGTCACCGGCAGGCAGGGGGAGTCATGGCAGTGGTGGTACGACAGGGAGACGTATATCACCGCGCACCG
GACGCCGGGCGGTGGAATGTACCGCTTCACGTACAACGAAGACCACTTCCCTGTCAACATTGGGCTGCCCGGCGGTCGCA
CGGTGGCGTATGAATATGACATCCAGAACCGGGTGGTGAAGACGACAGATCCGGAAGGCCGGGTGACGCAGACGCAGTGG
AACGGCGAGTTCGACGAAATCACGCGCACGGCGCTGGACGATGACGCTGTCTGGAAAACGCAGTACAACGCCCACGGCCA
GCCAGTGCAGGAGACGGACCCGGAAGGGCGGGTGACGCAGTACGCTTACGATGAACAGGGGCAGATGTGCAGCCGGACGG
ATGCGGCGGGCGGCACGGTGGTGACGGCGTTCGACAGCCGGGGGCAGATGACGCGGTACACCGACTGTTCAGGGCGTAGC
ACAGGATATGACCACGATGAGGACGGCAACCTGACGCGGGTGACGGACGCGGAAGGGAAGGTGGTACGCATCAGCTACAA
CCGACTTGGGTTGCCGGAGACGGTGAACTCACCGGGGAAACAGCAGGACAGGTATACCTGGAATGCGCTGGGGCTGATGA
GCAGCCACCGGCGCATCACGGGGAGCGTGGAGAGCTGGCGGTATACGCCGCGCGGTCTGCTGGCGGCGCACACGGATGAG
GAGAAGCGCGAGACGCGCTGGCAGTACACGCCGGAAGGCCGGGTGACCGCGCTGACCAACGGCAACGGGGCGCAGTACCG
GTTCAGTCACGATGCGGACGGCAGGCTGATGCGTGAGGTGCGCCCGGACGGACTGAGCCGTACTTTTATCCTGGACGACA
GCGGTTATCTGACGGCGATACAGACCACGGGTACGCAGGGCGGCGTGCGGCGGGAGACGCAGCAGCGGGATGCGCTGGGC
CTGCGTCTGCGGACGGAGAATGAACACGGCCAGCGGACGTTCAGCTACAACCGGCTGGACCAGATAACGGCAGTGACGCT
CACGCCCACGGAGGCGGGGCAACAGCAGCACCGGATGCAGGCCGACACGGTGCGTTTTGAGTATGACCGCAGCGGCTGGC
TGACGGCGGAGCACGCGGGGAACGGTAGCATATGTTATCAGCGCGACGCGCTGGGCAACCCGACGGACATCACGCTGCCG
GACGGGCAGCACCTGACGCATCTGTATTACGGGAGCGGGCATCTGTTACAGACGGCGCTGGACGGCCTGACGGTGAGCGA
GTATGAGCGCGACAGCCTGCACCGTCAGATAATGCGCACGCAGGGGCAGCTTGCGACGTACAGCGGCTATGACGACGACG
GGCTGCTGAGCTGGCAGCGCAGCCTGGCGCCCGGCAGTGCCCCTGTTCTTCCCGGCCAGCGCCCGGCGCGGCAGGGCTGC
GTGACGTCGAGGGACTATTACTGGAACAACCACGGCGAGGTGGGCACGATTGACGACGGCCTGCGTGGCAGCGTGGTGTA
CAGCTATGACAGAAGCGGTTACCTGACCGGGCGCTCAGGTCAGATGTATGACCATGACCGTTATTATTACGATAAGGCGG
GCAACCTGCTGGATAACGAAGGGCAGGGTCCGGTGATGAACAACCGGCTGCCGGGCTGTGGTCGTGACCGTTACGGTTAT
AACGAGTGGGGCGAGCTGACCACGCGGCGCGACCAGCAACTGGAGTGGAACGCGCAGGGGCAGCTGACGCGGGTCATCAG
CGGCAACACGGAGACGCACTACGGCTACGATGCGCTGGGGAGGCGAATCCGCAAGGCGACGTACGGGCGGCACACGGGCC
ATACGGCGCGGAGCCGGACGGACTTTGTGTGGGAGGGGTTCAGGCTGTTGCAGGAGAACGTGCAGCAGCAGGGCTGGCGG
ACATATGTGTACGATGCGGAACAGCCGTACACGCCGGTGGCGAGCGTGACGGGGCGGGGAGAAAGCAGGCAGGTGTGGTA
TTACCACACGGACGTGACGGGCACGCCGCAGGAGGTGACGGCGGCGGACGGAACGCTGGTGTGGGCGGGGTATATCAGGG
GGTTTGGAGAGAATGCGGCGGACATCAGCAACAGCGGGGCGTACTTTCACCAGCCGCTGCGGCTGCCGGGGCAGTATTTT
GACGACGAGACGGGGCTGCATTACAATCTGTTCAGATATTATGCACCGGAGTGTGGACGGTTCGTCAGTCAGGATCCGAT
TGGGTTAAGGGGCGGGTTAAACCTGTATGCGTACTGCCCTAATCCACTGACATGGATAGATCCTCTGGGACTGGATTTAC
ACCATATAATTCCGCAAGAGGTTTGGAAAACTTTTAAAACGGATTTAAAAAAAGTCACCGGATATGTGCAAAACGTCACG
AAGAAAGCAATGGATGTAACAAACTTAATTGATCTGGATAAACCTTTCCATGGTAATCATCCTGCCTATAGTGCTTATGT
AAAAGATAAAATTAGTGAACTTATAAAAAATAAAAAATTAAGTTTAACTGAGCTAAGAAATTTGCAGGATGAGTTGAGGT
CTAAAATTAATGCTGCAAAAGCATCTGGTAAAAATCTGAATGACTATTTTAAAGGAGGTTGCTAA