Detailed information of component protein
Summary
External database links
Locus tag (Gene) | HMPREF1171_RS04735 |
Coordinate (Strand) | 1034766..1036046 (+) |
NCBI ID | WP_005299988.1 |
RefSeq | NZ_JH815591 |
Uniprot ID | K1KBE6_9GAMM |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-426 | VDDFNQQLSLVVLNSEQLDGSQQVQYRFDEMGGTLGASEQDDWQLRDRLGAVLPAHARIELNDGRFCLCDLSGQTYINGATSPIGRARKVHLEQGDELIVGPFRLRTYLGAITPEQSLQQVLGNRATEQLDEWLTGDEPTARTDDPRTLAADPLLALQQERRTPNSLMDGLPTAGVPTDGPLADSRLQASPRSQPDVDVSPLAPFSAVENTMNQEFLDMPSIENHPDYQLSLDGVDHVALTPLMRGLGQPLQLQDTQQAHDMLEEMGKTVRAMVEGLLQLQTEQAALADKHLRPIEDNPLRLGLDYDETLAVLFAEQKSPVHLSAPAAVAESLHNVRIHHVANQQAIGAALDSILQAFSPEALIGRFEQYRRSGASGMADEGWAWNMYQHYYRELTSARQQGFDKLFHQVYAQAYDQAVRQQQGLI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9869 | - | - |
Protein sequence: 427 a.a.
>T6CP011346 NZ_JH815591:1034766-1036046 [Aeromonas dhakensis] [FHA]
VDDFNQQLSLVVLNSEQLDGSQQVQYRFDEMGGTLGASEQDDWQLRDRLGAVLPAHARIELNDGRFCLCDLSGQTYINGA
TSPIGRARKVHLEQGDELIVGPFRLRTYLGAITPEQSLQQVLGNRATEQLDEWLTGDEPTARTDDPRTLAADPLLALQQE
RRTPNSLMDGLPTAGVPTDGPLADSRLQASPRSQPDVDVSPLAPFSAVENTMNQEFLDMPSIENHPDYQLSLDGVDHVAL
TPLMRGLGQPLQLQDTQQAHDMLEEMGKTVRAMVEGLLQLQTEQAALADKHLRPIEDNPLRLGLDYDETLAVLFAEQKSP
VHLSAPAAVAESLHNVRIHHVANQQAIGAALDSILQAFSPEALIGRFEQYRRSGASGMADEGWAWNMYQHYYRELTSARQ
QGFDKLFHQVYAQAYDQAVRQQQGLI*
VDDFNQQLSLVVLNSEQLDGSQQVQYRFDEMGGTLGASEQDDWQLRDRLGAVLPAHARIELNDGRFCLCDLSGQTYINGA
TSPIGRARKVHLEQGDELIVGPFRLRTYLGAITPEQSLQQVLGNRATEQLDEWLTGDEPTARTDDPRTLAADPLLALQQE
RRTPNSLMDGLPTAGVPTDGPLADSRLQASPRSQPDVDVSPLAPFSAVENTMNQEFLDMPSIENHPDYQLSLDGVDHVAL
TPLMRGLGQPLQLQDTQQAHDMLEEMGKTVRAMVEGLLQLQTEQAALADKHLRPIEDNPLRLGLDYDETLAVLFAEQKSP
VHLSAPAAVAESLHNVRIHHVANQQAIGAALDSILQAFSPEALIGRFEQYRRSGASGMADEGWAWNMYQHYYRELTSARQ
QGFDKLFHQVYAQAYDQAVRQQQGLI*
Nucleotide sequence: 1281 bp
>T6CP011346 NZ_JH815591:1034766-1036046 [Aeromonas dhakensis] [FHA]
GTGGACGATTTTAACCAGCAACTTTCCCTGGTGGTGCTCAACAGCGAACAGCTCGACGGCAGCCAGCAGGTGCAGTACCG
CTTCGACGAGATGGGGGGGACCCTGGGGGCTTCCGAGCAGGATGACTGGCAGCTGCGGGACAGGTTGGGGGCCGTGCTGC
CCGCCCACGCCCGCATCGAGCTCAACGACGGTCGCTTCTGCCTGTGCGATCTGAGCGGCCAGACCTATATCAATGGCGCC
ACCTCACCTATCGGGCGGGCCCGCAAGGTGCATCTGGAGCAGGGGGACGAGCTCATCGTCGGCCCGTTCCGGTTGCGTAC
CTACCTGGGGGCCATCACCCCCGAGCAGAGCCTGCAGCAGGTGCTGGGCAATCGTGCCACCGAGCAGCTCGACGAGTGGC
TGACCGGTGATGAACCCACCGCCCGAACCGATGATCCGCGTACCCTAGCGGCCGATCCCCTGCTGGCACTGCAACAGGAG
CGCCGGACCCCCAATTCGTTGATGGATGGCTTGCCAACAGCTGGCGTGCCGACGGATGGCCCGCTGGCGGATAGTCGCCT
GCAGGCTTCACCGCGTTCACAGCCGGATGTGGACGTTTCCCCTCTTGCCCCCTTTTCTGCTGTCGAGAACACCATGAACC
AAGAATTTCTGGATATGCCCAGCATCGAGAACCACCCCGATTATCAGCTGTCGCTGGACGGCGTCGATCACGTGGCCCTG
ACCCCGCTGATGCGCGGCCTGGGTCAGCCCTTGCAACTGCAGGACACCCAACAGGCCCACGACATGCTCGAAGAGATGGG
CAAGACGGTGCGGGCCATGGTGGAGGGGTTGCTGCAGTTGCAAACCGAACAGGCGGCGCTGGCGGACAAGCACCTGCGCC
CCATCGAGGACAACCCGCTGCGCCTGGGCCTTGACTATGACGAGACCCTGGCGGTGCTGTTTGCCGAGCAGAAGAGCCCG
GTCCACCTGAGTGCGCCGGCGGCGGTGGCCGAGAGCCTACACAATGTGCGCATCCACCACGTGGCAAACCAGCAGGCCAT
CGGTGCGGCGCTGGACAGCATTCTGCAAGCCTTCTCGCCCGAGGCGCTGATCGGCCGGTTCGAACAATACCGCCGCAGTG
GCGCGTCGGGCATGGCCGATGAAGGTTGGGCCTGGAACATGTACCAGCACTACTACCGCGAGCTCACCTCCGCCCGCCAG
CAGGGGTTCGACAAGCTGTTCCACCAGGTGTATGCCCAGGCCTATGACCAGGCCGTGCGTCAGCAACAGGGACTGATTTG
A
GTGGACGATTTTAACCAGCAACTTTCCCTGGTGGTGCTCAACAGCGAACAGCTCGACGGCAGCCAGCAGGTGCAGTACCG
CTTCGACGAGATGGGGGGGACCCTGGGGGCTTCCGAGCAGGATGACTGGCAGCTGCGGGACAGGTTGGGGGCCGTGCTGC
CCGCCCACGCCCGCATCGAGCTCAACGACGGTCGCTTCTGCCTGTGCGATCTGAGCGGCCAGACCTATATCAATGGCGCC
ACCTCACCTATCGGGCGGGCCCGCAAGGTGCATCTGGAGCAGGGGGACGAGCTCATCGTCGGCCCGTTCCGGTTGCGTAC
CTACCTGGGGGCCATCACCCCCGAGCAGAGCCTGCAGCAGGTGCTGGGCAATCGTGCCACCGAGCAGCTCGACGAGTGGC
TGACCGGTGATGAACCCACCGCCCGAACCGATGATCCGCGTACCCTAGCGGCCGATCCCCTGCTGGCACTGCAACAGGAG
CGCCGGACCCCCAATTCGTTGATGGATGGCTTGCCAACAGCTGGCGTGCCGACGGATGGCCCGCTGGCGGATAGTCGCCT
GCAGGCTTCACCGCGTTCACAGCCGGATGTGGACGTTTCCCCTCTTGCCCCCTTTTCTGCTGTCGAGAACACCATGAACC
AAGAATTTCTGGATATGCCCAGCATCGAGAACCACCCCGATTATCAGCTGTCGCTGGACGGCGTCGATCACGTGGCCCTG
ACCCCGCTGATGCGCGGCCTGGGTCAGCCCTTGCAACTGCAGGACACCCAACAGGCCCACGACATGCTCGAAGAGATGGG
CAAGACGGTGCGGGCCATGGTGGAGGGGTTGCTGCAGTTGCAAACCGAACAGGCGGCGCTGGCGGACAAGCACCTGCGCC
CCATCGAGGACAACCCGCTGCGCCTGGGCCTTGACTATGACGAGACCCTGGCGGTGCTGTTTGCCGAGCAGAAGAGCCCG
GTCCACCTGAGTGCGCCGGCGGCGGTGGCCGAGAGCCTACACAATGTGCGCATCCACCACGTGGCAAACCAGCAGGCCAT
CGGTGCGGCGCTGGACAGCATTCTGCAAGCCTTCTCGCCCGAGGCGCTGATCGGCCGGTTCGAACAATACCGCCGCAGTG
GCGCGTCGGGCATGGCCGATGAAGGTTGGGCCTGGAACATGTACCAGCACTACTACCGCGAGCTCACCTCCGCCCGCCAG
CAGGGGTTCGACAAGCTGTTCCACCAGGTGTATGCCCAGGCCTATGACCAGGCCGTGCGTCAGCAACAGGGACTGATTTG
A