Detailed information of component protein
Summary
| Component ID | T6CP011327 |
| Component protein type | TssO |
| T6SS ID (Type) | T6SS00907  (Type iii) |
| Strain | Bacteroides fragilis NCTC 9343 |
| Replicon | chromosome |
| Sequence | Protein sequence (176 a.a.); Nucleotide sequence (528 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF9343_RS09370 |
| Coordinate (Strand) | 2347862..2348389 (-) |
| NCBI ID | 492268197 |
| RefSeq | NC_003228 |
| Uniprot ID | A0A015ZSX7_BACFG, A0A015VY10_BACFG, A0A017NCJ2_BACFG, A0A016GFI1_BACFG, Q5LDV3_BACFN, A0A081TTN4_BACFG, A0A0E2AP17_BACFG |
| KEGG ID | bfs:BF9343_1921 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssO | PF17561.4 | 6.4e-53 | 13..160 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-18 | MSITPKNKSSKTVSERER |
| Transmembrane helix | 19-41 | FIGFVYVLTLFIVITGACGFILF |
| Outside | 42-175 | KYAGTRHIFSNKIMVIKKMERQKEFQNIQSVQIVSADTLFSRIEQFEPGVNASYEENDIKFLINDLAKQWERNSFDKRNKMFWHLASVYEMWFADKKELWSKQDNIIKFKKNLEECEVGLQKKEGELKNKGGKP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.8568 | - | - |
Protein sequence: 176 a.a.
>T6CP011327 NC_003228:c2348389-2347862 [Bacteroides fragilis NCTC 9343] [TssO]
MSITPKNKSSKTVSERERFIGFVYVLTLFIVITGACGFILFKYAGTRHIFSNKIMVIKKMERQKEFQNIQSVQIVSADTL
FSRIEQFEPGVNASYEENDIKFLINDLAKQWERNSFDKRNKMFWHLASVYEMWFADKKELWSKQDNIIKFKKNLEECEVG
LQKKEGELKNKGGKP*
MSITPKNKSSKTVSERERFIGFVYVLTLFIVITGACGFILFKYAGTRHIFSNKIMVIKKMERQKEFQNIQSVQIVSADTL
FSRIEQFEPGVNASYEENDIKFLINDLAKQWERNSFDKRNKMFWHLASVYEMWFADKKELWSKQDNIIKFKKNLEECEVG
LQKKEGELKNKGGKP*
Nucleotide sequence: 528 bp
>T6CP011327 NC_003228:c2348389-2347862 [Bacteroides fragilis NCTC 9343] [TssO]
ATGAGCATAACCCCTAAAAATAAAAGCAGCAAAACCGTTAGCGAGCGTGAACGCTTTATCGGATTTGTATATGTGCTTAC
CCTGTTTATTGTTATCACAGGAGCCTGTGGATTTATTCTTTTCAAGTATGCAGGGACACGCCACATCTTCTCCAATAAAA
TAATGGTCATTAAAAAGATGGAGCGGCAAAAGGAATTTCAAAATATACAATCAGTACAGATTGTGAGCGCAGATACCCTA
TTTTCACGTATTGAACAGTTTGAGCCGGGCGTCAATGCCTCTTATGAGGAAAATGATATCAAGTTCCTGATAAACGACCT
TGCCAAACAATGGGAAAGAAACAGTTTTGACAAGCGCAATAAGATGTTCTGGCATCTCGCTTCGGTATATGAAATGTGGT
TTGCCGACAAGAAAGAACTATGGAGCAAGCAGGATAACATAATAAAATTCAAGAAAAATCTGGAGGAGTGCGAAGTCGGA
CTCCAGAAGAAGGAAGGCGAACTTAAAAATAAAGGAGGCAAGCCATGA
ATGAGCATAACCCCTAAAAATAAAAGCAGCAAAACCGTTAGCGAGCGTGAACGCTTTATCGGATTTGTATATGTGCTTAC
CCTGTTTATTGTTATCACAGGAGCCTGTGGATTTATTCTTTTCAAGTATGCAGGGACACGCCACATCTTCTCCAATAAAA
TAATGGTCATTAAAAAGATGGAGCGGCAAAAGGAATTTCAAAATATACAATCAGTACAGATTGTGAGCGCAGATACCCTA
TTTTCACGTATTGAACAGTTTGAGCCGGGCGTCAATGCCTCTTATGAGGAAAATGATATCAAGTTCCTGATAAACGACCT
TGCCAAACAATGGGAAAGAAACAGTTTTGACAAGCGCAATAAGATGTTCTGGCATCTCGCTTCGGTATATGAAATGTGGT
TTGCCGACAAGAAAGAACTATGGAGCAAGCAGGATAACATAATAAAATTCAAGAAAAATCTGGAGGAGTGCGAAGTCGGA
CTCCAGAAGAAGGAAGGCGAACTTAAAAATAAAGGAGGCAAGCCATGA