Detailed information of component protein
Summary
| Component ID | T6CP011304 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00926  (Type iii) |
| Strain | Bacteroides fragilis 638R |
| Replicon | chromosome |
| Sequence | Protein sequence (150 a.a.); Nucleotide sequence (450 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF638R_RS09365 |
| Coordinate (Strand) | 2351532..2351981 (-) |
| NCBI ID | WP_005787103.1 |
| RefSeq | NC_016776 |
| Uniprot ID | A0A015WIX0_BACFG, A0A015U2A5_BACFG, A0A016AK82_BACFG, A0A017NC54_BACFG, A0A016HZ77_BACFG, Q5LDT2_BACFN, A0A081TTL4_BACFG, E1WVV0_BACF6, A0A0E2AP22_BACFG |
| KEGG ID | bfs:BF9343_1942, bfg:BF638R_1993, bfb:VU15_08410 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-149 | MAILEYGIGGNEVKVDTSEAIANIPENRSLIVEQLTADEPVTPEAVKGLSTIEEVFAHFLPNIDVEFENEEGQPVKENFRFSSVADFSVKNMTQNSPFLHKLDTEKTFYEGMVTQLRSNKVLQRVLENPESKKAFISALEALSNELKTE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9936 | - | - |
Protein sequence: 150 a.a.
>T6CP011304 NC_016776:c2351981-2351532 [Bacteroides fragilis 638R] [TssB]
MAILEYGIGGNEVKVDTSEAIANIPENRSLIVEQLTADEPVTPEAVKGLSTIEEVFAHFLPNIDVEFENEEGQPVKENFR
FSSVADFSVKNMTQNSPFLHKLDTEKTFYEGMVTQLRSNKVLQRVLENPESKKAFISALEALSNELKTE*
MAILEYGIGGNEVKVDTSEAIANIPENRSLIVEQLTADEPVTPEAVKGLSTIEEVFAHFLPNIDVEFENEEGQPVKENFR
FSSVADFSVKNMTQNSPFLHKLDTEKTFYEGMVTQLRSNKVLQRVLENPESKKAFISALEALSNELKTE*
Nucleotide sequence: 450 bp
>T6CP011304 NC_016776:c2351981-2351532 [Bacteroides fragilis 638R] [TssB]
ATGGCAATACTTGAATATGGAATTGGTGGTAATGAAGTGAAAGTTGATACTTCCGAAGCCATCGCAAACATTCCGGAGAA
TCGCTCCCTCATAGTTGAACAGTTAACTGCTGACGAACCTGTAACTCCTGAAGCGGTCAAAGGCTTAAGCACTATCGAAG
AGGTGTTTGCGCACTTCTTGCCCAACATTGATGTTGAATTTGAAAATGAAGAAGGGCAACCGGTAAAAGAAAACTTTAGA
TTTAGCTCAGTGGCGGACTTCAGTGTGAAGAATATGACACAGAATAGTCCATTCCTCCATAAGTTGGATACGGAGAAAAC
ATTCTACGAGGGGATGGTGACACAATTGCGTTCTAATAAAGTTCTACAACGAGTGTTGGAGAATCCGGAATCCAAAAAGG
CGTTTATCAGCGCACTGGAGGCATTGAGTAACGAATTAAAGACCGAATAA
ATGGCAATACTTGAATATGGAATTGGTGGTAATGAAGTGAAAGTTGATACTTCCGAAGCCATCGCAAACATTCCGGAGAA
TCGCTCCCTCATAGTTGAACAGTTAACTGCTGACGAACCTGTAACTCCTGAAGCGGTCAAAGGCTTAAGCACTATCGAAG
AGGTGTTTGCGCACTTCTTGCCCAACATTGATGTTGAATTTGAAAATGAAGAAGGGCAACCGGTAAAAGAAAACTTTAGA
TTTAGCTCAGTGGCGGACTTCAGTGTGAAGAATATGACACAGAATAGTCCATTCCTCCATAAGTTGGATACGGAGAAAAC
ATTCTACGAGGGGATGGTGACACAATTGCGTTCTAATAAAGTTCTACAACGAGTGTTGGAGAATCCGGAATCCAAAAAGG
CGTTTATCAGCGCACTGGAGGCATTGAGTAACGAATTAAAGACCGAATAA