Detailed information of component protein


Summary

Component ID T6CP011302
Component protein type TssH
T6SS ID (Type) T6SS00926 experimental (Type iii)
Strain Bacteroides fragilis 638R
Replicon chromosome
Sequence Protein sequence (828 a.a.); Nucleotide sequence (2484 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF638R_RS09355
Coordinate (Strand) 2347641..2350124 (-)
NCBI ID WP_005794654.1
RefSeq NC_016776
Uniprot ID A0A016GFK1_BACFG, A0A4P8LDQ1_BACFG, E1WVU8_BACF6, A0A0E2AQ93_BACFG
KEGG ID bfg:BF638R_1991
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.3e-42 566..728
AAA_lid_9 PF17871.3 6e-22 351..441
ClpB_D2-small PF10431.11 1.1e-16 735..814
AAA PF00004.31 5.7e-10 212..342
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-827 MDFLNINETVQSVIRISKGVAREYGNASYAPAHLLFALMHKEVGLRSFVESLGKDADYLREWAEVRIEEYPKAAGAGEIMPDPKVSELFEQADNVRIKWGLLEINPLCLLAAIATPEAGFSTDELRSFPIREREIHDLFTSGMGNMKKSVSTQTDLPGIEAPLWTAGAGNLDKYCTDKTALAADKKVYPIVCRDRETRMMMEILGRMGKPNVLIIGDAGVGKTALVDGLACSIIEGTVPQYLKDMTIYELDTGTLIAGATYKGEIEERLKGIIKELSAHGNAILFIDEIHTLIDPKSGNSGAASILKPELAKGNITVIGVTTVDEYRKLIEPDHALNRRFEVLQVSEPDLASTVNMIQAALERYESYHGVGVDVDSLPECVALAKRYVKERRLPDAAIDLIDRTLSAVKMINQSGEKDIKGLAEQLAAIEAAEDQPEAERTEKLRLVNFTMKNRLSPILLGMLSDGQNEPESSDYGEWMDYILSVLDRLRELTKEKIGKITSHEVAAVVSSSTGIPIGKIESGEKEKLLNMEDILRRRVVGQDNALKVLTDAIVESRSGMNKPGQPIGSFFLLGPTGTGKTELAKTLAEALFNDEKAMIRFDMSEFKEEHSAALLLGAPPGYVGYEEGGVLVNRIRRQPYAVVLFDEIEKAHSSVYDIFLQIMDEGKLHDRLGKEGDFSNSIVLFTSNVGSEWLSKQINEGKNPSTTDLMEVMGSYFRPEFLARLSEIVPFSPINETMLVRIFEIQLKGVIALLEKQHIDIEITEKAKNLLATRGFTPKYGARQVAGTIRNYIRRPISKMIVAGTLTAGNTVVVDVADNGDIDWNVK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9943 - -


  Protein sequence: 828 a.a.    

>T6CP011302 NC_016776:c2350124-2347641 [Bacteroides fragilis 638R] [TssH]
MDFLNINETVQSVIRISKGVAREYGNASYAPAHLLFALMHKEVGLRSFVESLGKDADYLREWAEVRIEEYPKAAGAGEIM
PDPKVSELFEQADNVRIKWGLLEINPLCLLAAIATPEAGFSTDELRSFPIREREIHDLFTSGMGNMKKSVSTQTDLPGIE
APLWTAGAGNLDKYCTDKTALAADKKVYPIVCRDRETRMMMEILGRMGKPNVLIIGDAGVGKTALVDGLACSIIEGTVPQ
YLKDMTIYELDTGTLIAGATYKGEIEERLKGIIKELSAHGNAILFIDEIHTLIDPKSGNSGAASILKPELAKGNITVIGV
TTVDEYRKLIEPDHALNRRFEVLQVSEPDLASTVNMIQAALERYESYHGVGVDVDSLPECVALAKRYVKERRLPDAAIDL
IDRTLSAVKMINQSGEKDIKGLAEQLAAIEAAEDQPEAERTEKLRLVNFTMKNRLSPILLGMLSDGQNEPESSDYGEWMD
YILSVLDRLRELTKEKIGKITSHEVAAVVSSSTGIPIGKIESGEKEKLLNMEDILRRRVVGQDNALKVLTDAIVESRSGM
NKPGQPIGSFFLLGPTGTGKTELAKTLAEALFNDEKAMIRFDMSEFKEEHSAALLLGAPPGYVGYEEGGVLVNRIRRQPY
AVVLFDEIEKAHSSVYDIFLQIMDEGKLHDRLGKEGDFSNSIVLFTSNVGSEWLSKQINEGKNPSTTDLMEVMGSYFRPE
FLARLSEIVPFSPINETMLVRIFEIQLKGVIALLEKQHIDIEITEKAKNLLATRGFTPKYGARQVAGTIRNYIRRPISKM
IVAGTLTAGNTVVVDVADNGDIDWNVK*

  Nucleotide sequence: 2484 bp    

>T6CP011302 NC_016776:c2350124-2347641 [Bacteroides fragilis 638R] [TssH]
ATGGATTTTTTGAACATCAATGAAACAGTTCAGAGCGTAATCCGAATATCAAAAGGTGTCGCCCGTGAGTATGGCAATGC
CAGCTATGCTCCGGCACACCTTTTGTTTGCCTTGATGCACAAAGAGGTAGGTCTGCGTTCGTTTGTCGAATCGTTGGGTA
AGGATGCGGATTACTTGCGCGAATGGGCGGAGGTAAGAATAGAGGAGTACCCCAAGGCTGCCGGCGCAGGCGAGATAATG
CCCGATCCGAAAGTTAGCGAACTGTTTGAGCAAGCCGATAATGTACGAATCAAGTGGGGACTGCTGGAAATCAATCCACT
TTGCCTGCTGGCAGCCATTGCTACACCCGAAGCAGGTTTCAGTACGGACGAGTTGCGCTCGTTCCCTATTCGGGAGCGTG
AGATACATGACCTCTTCACGAGCGGAATGGGTAATATGAAAAAATCCGTAAGTACGCAGACTGACCTTCCGGGGATTGAA
GCCCCCCTATGGACAGCCGGGGCGGGCAATTTAGATAAGTACTGTACGGATAAGACTGCTCTTGCGGCAGACAAGAAAGT
ATATCCTATCGTGTGCCGTGACCGTGAGACACGCATGATGATGGAAATTCTGGGGCGGATGGGTAAGCCCAACGTGCTCA
TCATCGGCGATGCCGGTGTGGGTAAGACTGCCTTGGTAGACGGTTTGGCATGCAGCATCATTGAGGGTACAGTTCCCCAA
TATCTAAAGGACATGACTATCTATGAGCTTGACACAGGAACACTGATTGCGGGTGCTACCTACAAAGGGGAGATAGAAGA
ACGGCTGAAAGGAATCATCAAAGAATTGTCGGCTCACGGCAATGCGATTCTCTTCATTGATGAAATACATACGCTGATCG
ACCCCAAGTCGGGCAACAGCGGAGCGGCAAGCATCCTGAAGCCGGAGCTTGCCAAAGGAAATATAACGGTAATCGGAGTC
ACTACGGTGGACGAATACCGTAAACTAATTGAACCGGACCATGCCCTTAACCGGCGTTTTGAAGTATTGCAAGTATCGGA
ACCTGACCTTGCATCCACCGTAAATATGATACAGGCAGCTTTGGAAAGATATGAAAGCTACCACGGTGTGGGGGTAGATG
TAGATTCGTTGCCGGAATGCGTGGCACTCGCCAAGCGTTATGTCAAGGAACGCCGTTTGCCGGATGCCGCTATTGATTTG
ATAGACCGTACCCTCTCTGCGGTTAAGATGATTAACCAGAGCGGGGAAAAAGATATAAAGGGACTGGCAGAGCAGCTTGC
CGCAATTGAAGCGGCGGAAGACCAGCCCGAAGCGGAGCGCACGGAGAAGTTGCGGTTAGTCAATTTCACCATGAAGAACC
GGTTAAGCCCTATCCTTCTGGGAATGCTCTCCGATGGACAGAATGAACCGGAGTCATCAGACTACGGTGAATGGATGGAT
TATATTTTAAGTGTACTTGACCGATTACGTGAATTGACCAAAGAGAAAATCGGGAAAATCACTTCCCATGAAGTGGCAGC
CGTTGTTTCTTCTTCTACAGGTATCCCTATCGGCAAGATAGAGTCGGGCGAGAAAGAAAAGTTACTCAACATGGAAGATA
TTCTGCGTCGTAGAGTGGTGGGACAGGATAATGCGCTGAAGGTATTGACAGATGCCATTGTCGAATCACGAAGTGGAATG
AACAAACCGGGACAACCGATTGGCTCATTCTTCCTGCTGGGACCTACCGGAACCGGTAAGACCGAGTTGGCAAAAACATT
GGCAGAAGCACTTTTCAATGACGAAAAGGCGATGATTCGTTTTGATATGTCAGAGTTTAAGGAAGAACATTCGGCAGCCC
TGCTATTGGGAGCGCCTCCGGGATACGTGGGCTACGAAGAAGGTGGCGTACTCGTGAACCGGATACGTCGTCAGCCTTAT
GCGGTGGTGCTTTTCGATGAGATAGAGAAAGCCCATTCTTCCGTTTATGACATCTTCCTGCAAATCATGGACGAAGGCAA
GCTACACGACCGTTTGGGCAAAGAGGGGGATTTTTCCAATTCTATCGTACTGTTTACGTCCAATGTAGGTAGCGAATGGC
TTAGCAAGCAGATTAATGAGGGTAAGAATCCTTCTACCACTGACCTGATGGAAGTCATGGGCAGTTATTTCCGTCCGGAG
TTTCTTGCCCGTTTGTCGGAAATCGTGCCTTTCTCTCCTATTAACGAAACAATGCTGGTTCGTATCTTTGAGATACAGTT
AAAGGGAGTTATAGCATTGCTTGAGAAGCAGCATATTGACATTGAGATTACGGAGAAGGCAAAGAACCTGCTTGCTACCC
GTGGCTTCACTCCGAAATACGGAGCACGTCAGGTGGCGGGTACGATACGTAACTATATCCGCCGTCCTATCTCAAAGATG
ATTGTTGCAGGAACATTGACGGCAGGGAATACAGTTGTTGTCGATGTGGCGGATAATGGAGATATTGATTGGAATGTGAA
ATGA