Detailed information of component protein
Summary
| Component ID | T6CP011298 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00926  (Type iii) |
| Strain | Bacteroides fragilis 638R |
| Replicon | chromosome |
| Sequence | Protein sequence (140 a.a.); Nucleotide sequence (420 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF638R_RS09325 |
| Coordinate (Strand) | 2344359..2344778 (-) |
| NCBI ID | WP_005794665.1 |
| RefSeq | NC_016776 |
| Uniprot ID | A0A017NBI8_BACFG, D1JLQ1_BACFG, E1WVU2_BACF6, A0A0E2ANX6_BACFG |
| KEGG ID | bfg:BF638R_1985 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 3.5e-08 | 58..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-139 | MGFFDRLFKGKEVFADRRNPDMVCEMTLCGESHILSEFDIAYEPDNSSKEYMEAYAVFSEPVNAEVENWIMQSNRKENGVVRFYRNSDAMDEGALFEIKFSDASCVHYRNVSQGDASVKTIVMTFPSVRMGGDEFELKR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9878 | - | - |
Protein sequence: 140 a.a.
>T6CP011298 NC_016776:c2344778-2344359 [Bacteroides fragilis 638R] [TssD]
MGFFDRLFKGKEVFADRRNPDMVCEMTLCGESHILSEFDIAYEPDNSSKEYMEAYAVFSEPVNAEVENWIMQSNRKENGV
VRFYRNSDAMDEGALFEIKFSDASCVHYRNVSQGDASVKTIVMTFPSVRMGGDEFELKR*
MGFFDRLFKGKEVFADRRNPDMVCEMTLCGESHILSEFDIAYEPDNSSKEYMEAYAVFSEPVNAEVENWIMQSNRKENGV
VRFYRNSDAMDEGALFEIKFSDASCVHYRNVSQGDASVKTIVMTFPSVRMGGDEFELKR*
Nucleotide sequence: 420 bp
>T6CP011298 NC_016776:c2344778-2344359 [Bacteroides fragilis 638R] [TssD]
ATGGGCTTTTTCGACAGGCTGTTTAAAGGAAAAGAAGTGTTTGCGGACAGACGCAATCCGGATATGGTATGCGAAATGAC
GCTTTGCGGAGAGTCGCACATCTTGTCCGAGTTTGATATTGCCTATGAGCCGGATAATTCCTCGAAAGAATATATGGAAG
CATACGCTGTGTTCTCGGAGCCGGTAAATGCGGAGGTAGAGAACTGGATAATGCAATCGAACAGAAAAGAGAACGGAGTA
GTCCGATTCTACCGCAACAGCGATGCTATGGACGAAGGTGCACTGTTCGAGATAAAATTCAGTGATGCAAGTTGCGTGCA
TTATCGCAATGTATCGCAGGGAGACGCATCGGTAAAGACCATTGTGATGACTTTTCCGTCTGTCCGGATGGGAGGTGATG
AATTTGAACTAAAACGATAA
ATGGGCTTTTTCGACAGGCTGTTTAAAGGAAAAGAAGTGTTTGCGGACAGACGCAATCCGGATATGGTATGCGAAATGAC
GCTTTGCGGAGAGTCGCACATCTTGTCCGAGTTTGATATTGCCTATGAGCCGGATAATTCCTCGAAAGAATATATGGAAG
CATACGCTGTGTTCTCGGAGCCGGTAAATGCGGAGGTAGAGAACTGGATAATGCAATCGAACAGAAAAGAGAACGGAGTA
GTCCGATTCTACCGCAACAGCGATGCTATGGACGAAGGTGCACTGTTCGAGATAAAATTCAGTGATGCAAGTTGCGTGCA
TTATCGCAATGTATCGCAGGGAGACGCATCGGTAAAGACCATTGTGATGACTTTTCCGTCTGTCCGGATGGGAGGTGATG
AATTTGAACTAAAACGATAA