Detailed information of component protein


Summary

Component ID T6CP011296
Component protein type TssF
T6SS ID (Type) T6SS00926 experimental (Type iii)
Strain Bacteroides fragilis 638R
Replicon chromosome
Sequence Protein sequence (606 a.a.); Nucleotide sequence (1818 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF638R_RS09310
Coordinate (Strand) 2341611..2343428 (-)
NCBI ID WP_008768472.1
RefSeq NC_016776
Uniprot ID A0A015XAR1_BACFG, A0A7U8QCJ8_BACFG, E1WVT9_BACF6
KEGG ID bfg:BF638R_1982
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-605 MANLFTKESIKARMFKQAATLYDIRNIDGIDPLIRLLIEALSGEIFKLSGDVHAIESRLLEKVASALTPHTALVARPAHAIAAARSYSPQAIVSPTDLFAYKSTEIVKKYKMKNLFFTPLHETRIINAELKYLVTADEFCTISPEGERDAIAHLHSGVPVMGRKISIGMKIGSNVTTLNDLPLYIDIPHVADKSSYLKLLPYCHCTIAGIPIEIKGGIEYDSARSVSEKYDLGRLITEEITSKYAPHYLTLKAPGLKVRDLSRSRVPEEISSLLPGDFIAGCDADTVWIDIEFPTAFSKEVLEQVKVQMNTFIVVNKYPAKITRKVDSVSAILPLEKTEFEYFLFVDSITDNHGDQLREISSTQDESRAGCYSVRRGGCERFNAMDAKDFLNRLTDLLYDESVAFSSTDKDGMKEVIEQIEERVNQLGDKNKDGVGGQEMLSYVVIDQRYDKDTRLTVDYTLTNGEFANDIYAGEPLNDCANPDIDKDTLRFVTSVHGGKPSPSVKRRMDMYRFMLLSHGSIYTKEDIRNFCMARYGDSIRSVEVKLGYAAGKKESEGFIRTLDVYLRLSEGMQGLDKEEFVVELDSELRRLSPETYNYRVFINS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9970 - -


  Protein sequence: 606 a.a.    

>T6CP011296 NC_016776:c2343428-2341611 [Bacteroides fragilis 638R] [TssF]
MANLFTKESIKARMFKQAATLYDIRNIDGIDPLIRLLIEALSGEIFKLSGDVHAIESRLLEKVASALTPHTALVARPAHA
IAAARSYSPQAIVSPTDLFAYKSTEIVKKYKMKNLFFTPLHETRIINAELKYLVTADEFCTISPEGERDAIAHLHSGVPV
MGRKISIGMKIGSNVTTLNDLPLYIDIPHVADKSSYLKLLPYCHCTIAGIPIEIKGGIEYDSARSVSEKYDLGRLITEEI
TSKYAPHYLTLKAPGLKVRDLSRSRVPEEISSLLPGDFIAGCDADTVWIDIEFPTAFSKEVLEQVKVQMNTFIVVNKYPA
KITRKVDSVSAILPLEKTEFEYFLFVDSITDNHGDQLREISSTQDESRAGCYSVRRGGCERFNAMDAKDFLNRLTDLLYD
ESVAFSSTDKDGMKEVIEQIEERVNQLGDKNKDGVGGQEMLSYVVIDQRYDKDTRLTVDYTLTNGEFANDIYAGEPLNDC
ANPDIDKDTLRFVTSVHGGKPSPSVKRRMDMYRFMLLSHGSIYTKEDIRNFCMARYGDSIRSVEVKLGYAAGKKESEGFI
RTLDVYLRLSEGMQGLDKEEFVVELDSELRRLSPETYNYRVFINS*

  Nucleotide sequence: 1818 bp    

>T6CP011296 NC_016776:c2343428-2341611 [Bacteroides fragilis 638R] [TssF]
ATGGCAAATCTATTCACAAAAGAAAGCATTAAAGCCCGGATGTTCAAACAGGCGGCAACCCTATATGACATACGAAATAT
AGATGGTATAGACCCTCTTATCCGACTGCTGATTGAAGCCTTGTCGGGTGAAATCTTCAAGCTGTCCGGTGATGTGCACG
CCATTGAAAGCCGTTTGTTGGAGAAAGTCGCTTCCGCCCTTACTCCCCACACAGCATTGGTTGCCCGCCCCGCCCATGCC
ATTGCTGCCGCCCGGTCGTACTCCCCGCAAGCCATTGTGTCCCCTACAGACCTGTTTGCTTATAAAAGCACGGAGATTGT
GAAGAAGTATAAAATGAAAAATCTCTTCTTTACTCCGCTGCATGAAACCCGCATAATCAATGCCGAATTGAAATATCTCG
TTACGGCGGATGAATTTTGCACAATCAGTCCCGAAGGAGAGCGTGACGCCATTGCGCACCTTCACTCCGGCGTACCGGTG
ATGGGGCGGAAAATCAGCATCGGGATGAAGATTGGCAGCAATGTAACTACTCTCAACGACTTGCCATTATACATAGATAT
ACCACATGTAGCGGATAAGAGCAGCTATCTGAAATTACTGCCGTACTGCCATTGCACGATTGCCGGTATCCCTATAGAAA
TTAAAGGAGGAATCGAGTACGACTCCGCACGTTCGGTCAGTGAGAAATACGACCTTGGCAGGCTGATTACGGAAGAAATA
ACCAGCAAATATGCTCCCCACTACCTGACATTGAAAGCTCCCGGATTAAAAGTCAGAGATTTGTCACGTAGCAGAGTGCC
CGAAGAAATCTCTTCCCTGCTGCCAGGTGATTTCATTGCCGGATGTGATGCGGACACCGTGTGGATAGATATAGAATTTC
CCACCGCTTTTTCAAAAGAAGTACTGGAACAGGTAAAGGTGCAGATGAACACTTTCATCGTAGTAAACAAATATCCGGCA
AAGATTACCAGAAAGGTGGATTCCGTCTCTGCCATTCTCCCTTTGGAAAAGACGGAATTTGAATATTTCCTGTTTGTGGA
TTCGATTACCGATAACCACGGAGACCAACTTAGGGAAATTTCCAGCACACAGGATGAAAGTAGAGCCGGCTGTTATTCGG
TCAGAAGGGGCGGTTGCGAACGCTTCAATGCGATGGACGCCAAAGATTTTCTGAACCGTCTGACAGACCTGCTATATGAC
GAAAGCGTGGCTTTCTCTTCGACAGACAAAGACGGGATGAAAGAGGTGATCGAGCAGATAGAGGAACGGGTAAACCAATT
GGGAGATAAGAATAAAGACGGAGTCGGAGGACAGGAAATGCTGTCGTATGTAGTCATAGACCAACGTTATGACAAGGATA
CCCGGTTAACTGTGGATTATACTCTTACTAATGGCGAATTTGCCAATGACATCTATGCGGGAGAACCGTTGAATGACTGC
GCAAATCCCGATATAGACAAAGATACGCTGCGGTTTGTCACTTCCGTTCATGGAGGAAAGCCTTCCCCATCCGTAAAGCG
CCGGATGGATATGTACCGATTCATGCTGTTGTCACACGGCAGCATATACACAAAAGAGGATATACGCAATTTCTGCATGG
CAAGGTATGGCGACAGCATCCGCTCTGTGGAGGTAAAGCTCGGGTATGCAGCCGGTAAAAAAGAAAGCGAAGGTTTCATA
AGGACGCTGGACGTGTATCTACGGTTATCGGAGGGGATGCAAGGATTAGACAAGGAAGAGTTCGTTGTCGAATTGGACAG
TGAGCTCAGGCGGTTGTCTCCGGAGACCTATAACTACCGTGTTTTTATTAACTCATAG