Detailed information of component protein


Summary

Component ID T6CP011295
Component protein type TssI
T6SS ID (Type) T6SS00926 experimental (Type iii)
Strain Bacteroides fragilis 638R
Replicon chromosome
Sequence Protein sequence (617 a.a.); Nucleotide sequence (1851 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF638R_RS09305
Coordinate (Strand) 2339735..2341585 (-)
NCBI ID WP_008768471.1
RefSeq NC_016776
Uniprot ID A0A7U8L6V8_BACFG, E1WVT8_BACF6
KEGG ID bfg:BF638R_1981
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_base_V PF04717.14 3.7e-18 369..448
Phage_GPD PF05954.13 8.5e-11 60..187
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-616 MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTEFHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKETSYGFLSRLLRSYGEWFYYNGETLQIGDPEIDTESRAGYDVDLTSVNINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGATLGSRSAEKCSEPIFPTEARLPSIRPAYSAMDLEHYGDAGFHRNYSQLSQMRATSRYCGIRLGELVVTRVPESFPGVKIPDLGRYRITEITHTVNSKGQYSNTFCGVPGGTPVMPWGDAVMPVAYPEMARVLSNDDPKNQGRVKVRFMWQEIDGGESYWMRVQSPDAGKSEQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSEGAGTDNSVKSIRTRSGHTLEFNDDEGGNWGITIKDGNGCILHLDTKGKNIEITAPETLSLTAKNVSINAEENVQIAAKQNIDVTAEADINIAAKGNLMQQTDGDLSVSAKGSINAEAKTDVSLSGQNTTVDGKTKVTVSGAETLVSGKMTTVQGAAHKIDVM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9925 - -


  Protein sequence: 617 a.a.    

>T6CP011295 NC_016776:c2341585-2339735 [Bacteroides fragilis 638R] [TssI]
MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTE
FHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKE
TSYGFLSRLLRSYGEWFYYNGETLQIGDPEIDTESRAGYDVDLTSVNINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGA
TLGSRSAEKCSEPIFPTEARLPSIRPAYSAMDLEHYGDAGFHRNYSQLSQMRATSRYCGIRLGELVVTRVPESFPGVKIP
DLGRYRITEITHTVNSKGQYSNTFCGVPGGTPVMPWGDAVMPVAYPEMARVLSNDDPKNQGRVKVRFMWQEIDGGESYWM
RVQSPDAGKSEQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSEGAGTDNSVKSIRTRSGHTLEFNDDEG
GNWGITIKDGNGCILHLDTKGKNIEITAPETLSLTAKNVSINAEENVQIAAKQNIDVTAEADINIAAKGNLMQQTDGDLS
VSAKGSINAEAKTDVSLSGQNTTVDGKTKVTVSGAETLVSGKMTTVQGAAHKIDVM*

  Nucleotide sequence: 1851 bp    

>T6CP011295 NC_016776:c2341585-2339735 [Bacteroides fragilis 638R] [TssI]
ATGGCATCGACAAACTTGGACGCTGTAAGCGTGGAGATAAAAGTAGCAGGAAAAGTCTGCGATTATGTAACAATGGAACT
TTTTCAGTCGGTCAGTACACACCACCGTTTCAAAATCAAAGTAAACTATCGTCCGGACAAGCCAAGTGTCTGGGCTATCG
GTCCCGATGTGATATTCAAGCAACTGGGTGAGAAGGTATCCATCATCATGACCCACCATGAGAGTGGGGAGAAAACGGAA
TTTCACGGACTGATTTCTGATATTCATGTGGAAGGCTTCGACGGTAATCAGGGATTTGTCATTCTGGAAGGGGGAAGCCC
TACCATCCTGCTTGACAGAGACCCTGCTATGGACTGCTATGTAGAACAAAACCTGAATACGATAGTCAGCGACATACTTG
ACAAGAGCGGGGTGAAAATGAATGTGACCAACAATCCCAAACATACGGACATCATCCCCTATGTCGCCCGCTATAAAGAG
ACAAGCTACGGGTTTCTTTCCCGTCTGCTCCGCTCCTACGGCGAATGGTTCTATTACAACGGGGAAACATTGCAGATAGG
AGACCCGGAAATAGATACGGAAAGCCGTGCAGGGTATGATGTAGACCTGACGAGTGTCAACATCAATGCCACCATCCGTT
CGCTGAACCACAGCACCTATGAGTTCGACCCAGTCAACGACAAGTTCTATTACGACTACAGCGGAACGCCTAAAGGCGCC
ACCCTTGGTTCCCGTTCGGCTGAGAAATGCAGTGAACCTATCTTCCCTACCGAAGCGAGACTCCCCTCGATAAGACCCGC
ATATAGCGCAATGGATTTGGAGCACTACGGAGATGCCGGATTTCACCGCAACTATTCCCAATTGTCTCAAATGAGGGCTA
CGAGCCGTTATTGCGGCATCCGGCTGGGAGAATTGGTGGTTACCCGTGTACCCGAAAGTTTCCCGGGAGTTAAGATTCCC
GATTTGGGACGTTACCGCATCACGGAGATTACCCATACGGTAAACAGTAAAGGACAATATAGCAACACCTTCTGCGGTGT
ACCGGGTGGTACGCCCGTCATGCCGTGGGGAGACGCCGTGATGCCGGTAGCCTATCCGGAGATGGCAAGAGTGTTGAGCA
ATGACGACCCCAAGAATCAGGGGCGTGTCAAGGTGCGGTTCATGTGGCAGGAGATAGACGGCGGCGAGAGCTACTGGATG
CGGGTGCAAAGCCCGGATGCAGGCAAGAGCGAGCAAGTAGCCAAGAACCGTGGTTTTGTGTTTATTCCCGAACCGGGTGA
TTTGGTGATGGTAGGTTTTGAGCAAGGCAATCCAGACCGTCCGTATGTGACAGGAAGCCTTTTCTATAAGGCTAATTCAG
AGGGAGCGGGAACGGACAACAGTGTAAAGAGTATCCGTACACGCAGCGGACATACGTTAGAGTTCAATGATGATGAGGGT
GGTAACTGGGGCATTACGATTAAGGATGGTAACGGTTGTATACTCCATTTAGACACTAAAGGAAAAAATATTGAAATCAC
TGCCCCGGAAACCCTGTCTTTGACAGCAAAGAACGTTAGCATCAATGCTGAAGAAAATGTTCAGATTGCAGCTAAACAGA
ATATAGATGTAACCGCCGAAGCCGATATAAATATTGCGGCCAAAGGCAATTTGATGCAGCAGACAGACGGTGACCTGTCA
GTTTCCGCAAAAGGAAGCATAAATGCCGAAGCGAAAACCGATGTCAGTCTCTCGGGTCAAAATACAACGGTAGACGGTAA
GACCAAAGTGACAGTAAGCGGTGCAGAAACATTAGTATCAGGCAAGATGACAACTGTGCAGGGAGCTGCCCACAAAATAG
ATGTAATGTAA