Detailed information of component protein


Summary

Component ID T6CP011293
Component protein type TssK
T6SS ID (Type) T6SS00926 experimental (Type iii)
Strain Bacteroides fragilis 638R
Replicon chromosome
Sequence Protein sequence (381 a.a.); Nucleotide sequence (1143 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF638R_RS09280
Coordinate (Strand) 2332956..2334098 (-)
NCBI ID WP_008768466.1
RefSeq NC_016776
Uniprot ID A0A7U8L7N9_BACFG, E1WVT3_BACF6
KEGG ID bfg:BF638R_1976
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-380 MAKKNLVNWSDCMPLSAAIFSQHDDYFLDSIRDSIEVRTNSYNYGLLPARQNRDGENGIRISQHVTGHIEVRLKSCEAITSSGIRIQFDATETGSELVKNYSVESDTRKNITQWDIILSVDPFHRVGSGDPNPEEVPPRHPNALPSYRLFVMPKGEINVSELGAHYLTIGRIRKDAERFMVDADFIPPCTTMKSHPELQEYHAKFGNMFRSLENYSKIIIAKIHNRDNRGELGAHISLICREMLRYLATLQFSYTNKGLYNAPIDVLEAVSSLAHIMYVSFSYLSGTQKEETQKYFYEWSDVTPGSFDEQLADTLEMLYEHTDIRASMVRAYSFMYTLTELWQRLSTLEYIGQHKENIVVSERTTGNNTTGQNKTWSIMD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9582 - -


  Protein sequence: 381 a.a.    

>T6CP011293 NC_016776:c2334098-2332956 [Bacteroides fragilis 638R] [TssK]
MAKKNLVNWSDCMPLSAAIFSQHDDYFLDSIRDSIEVRTNSYNYGLLPARQNRDGENGIRISQHVTGHIEVRLKSCEAIT
SSGIRIQFDATETGSELVKNYSVESDTRKNITQWDIILSVDPFHRVGSGDPNPEEVPPRHPNALPSYRLFVMPKGEINVS
ELGAHYLTIGRIRKDAERFMVDADFIPPCTTMKSHPELQEYHAKFGNMFRSLENYSKIIIAKIHNRDNRGELGAHISLIC
REMLRYLATLQFSYTNKGLYNAPIDVLEAVSSLAHIMYVSFSYLSGTQKEETQKYFYEWSDVTPGSFDEQLADTLEMLYE
HTDIRASMVRAYSFMYTLTELWQRLSTLEYIGQHKENIVVSERTTGNNTTGQNKTWSIMD*

  Nucleotide sequence: 1143 bp    

>T6CP011293 NC_016776:c2334098-2332956 [Bacteroides fragilis 638R] [TssK]
ATGGCAAAGAAAAATTTAGTAAACTGGTCGGACTGTATGCCGCTGTCAGCCGCCATCTTCAGCCAACATGACGATTACTT
TCTGGACAGCATTCGCGACAGCATAGAAGTACGAACCAACAGTTATAACTACGGGTTGCTGCCCGCCCGACAAAACCGGG
ATGGGGAGAACGGTATCCGTATCAGCCAGCACGTGACCGGACACATTGAAGTGCGGCTGAAATCCTGTGAAGCAATCACC
TCTTCGGGCATCCGCATCCAATTTGATGCCACCGAAACGGGAAGCGAATTAGTGAAGAACTATTCTGTAGAATCGGATAC
CCGTAAGAATATCACGCAATGGGACATTATCCTCTCCGTGGATCCGTTCCACCGGGTAGGCTCGGGTGACCCCAATCCGG
AGGAAGTTCCACCCCGCCATCCGAACGCCTTGCCCTCCTATCGGCTGTTTGTGATGCCCAAAGGAGAAATCAATGTGAGT
GAGCTGGGGGCGCATTACCTGACCATCGGCCGTATCCGCAAGGATGCCGAACGATTCATGGTAGATGCCGACTTTATCCC
GCCCTGTACGACAATGAAAAGCCACCCCGAACTGCAAGAGTATCATGCCAAGTTCGGAAATATGTTCCGCTCACTGGAGA
ATTACAGCAAAATCATCATAGCTAAAATACATAACAGGGATAATCGCGGCGAACTGGGTGCGCACATCTCTCTGATATGC
CGTGAGATGCTCCGCTATCTCGCCACCCTGCAATTCAGTTATACCAATAAAGGGTTATACAATGCTCCCATAGACGTATT
GGAAGCCGTATCGAGTCTGGCGCATATCATGTATGTAAGTTTCAGCTACCTATCAGGGACGCAAAAGGAGGAAACGCAGA
AATATTTCTACGAGTGGAGCGACGTAACGCCCGGTTCGTTCGACGAGCAACTCGCCGATACGTTGGAGATGCTGTACGAA
CATACGGATATCCGGGCTTCGATGGTTCGTGCCTATTCGTTTATGTACACACTTACCGAATTGTGGCAACGGCTCAGTAC
GCTGGAATATATCGGTCAGCATAAGGAGAATATTGTAGTATCGGAACGCACTACGGGGAACAATACTACGGGACAGAACA
AAACATGGAGCATAATGGATTGA