Detailed information of component protein


Summary

Component ID T6CP011292
Component protein type TssG
T6SS ID (Type) T6SS00926 experimental (Type iii)
Strain Bacteroides fragilis 638R
Replicon chromosome
Sequence Protein sequence (319 a.a.); Nucleotide sequence (957 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF638R_RS09275
Coordinate (Strand) 2331998..2332954 (-)
NCBI ID WP_008768465.1
RefSeq NC_016776
Uniprot ID A0A016AK96_BACFG, A0A7U8L7Y5_BACFG, E1WVT2_BACF6
KEGG ID bfg:BF638R_1975
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 4e-11 181..318
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-318 MEHRLPKEIKGLLPPNTMDTDFKAELYGALLAEAGFDTAQIMMVRDGNNLSNVSKDIRSVKHRNHVGIAEGAYIELKTNRRGIYDSLPEGLFHEALFPGKVKDLELILEEMQQHRNEEFFIRRFFSLLESEVDREGIQAQLLELRYDKKNKYSDYAKLFAACWPVIHILSGQGALLFIKFMPHIHSIRGRLEEVSDALSQILEAPVKVRPKMVQRTIRAQKPNRLGNMRLGANSVNVGVLNSAEADLHIHIGDLPTREVERFLPGNRSRKALEMLADIFLGAWQEFDVTVSVSPDERKTYLKPTGDASPCYLGINTYL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9924 - -


  Protein sequence: 319 a.a.    

>T6CP011292 NC_016776:c2332954-2331998 [Bacteroides fragilis 638R] [TssG]
MEHRLPKEIKGLLPPNTMDTDFKAELYGALLAEAGFDTAQIMMVRDGNNLSNVSKDIRSVKHRNHVGIAEGAYIELKTNR
RGIYDSLPEGLFHEALFPGKVKDLELILEEMQQHRNEEFFIRRFFSLLESEVDREGIQAQLLELRYDKKNKYSDYAKLFA
ACWPVIHILSGQGALLFIKFMPHIHSIRGRLEEVSDALSQILEAPVKVRPKMVQRTIRAQKPNRLGNMRLGANSVNVGVL
NSAEADLHIHIGDLPTREVERFLPGNRSRKALEMLADIFLGAWQEFDVTVSVSPDERKTYLKPTGDASPCYLGINTYL*

  Nucleotide sequence: 957 bp    

>T6CP011292 NC_016776:c2332954-2331998 [Bacteroides fragilis 638R] [TssG]
ATGGAACATCGCTTACCCAAAGAGATAAAGGGGCTTCTTCCGCCCAATACAATGGACACCGACTTCAAGGCAGAGCTATA
CGGAGCCTTGCTAGCGGAAGCCGGGTTCGACACCGCTCAAATTATGATGGTGCGTGACGGTAATAACCTGAGCAATGTTT
CGAAAGATATCCGATCGGTGAAGCATAGGAATCATGTCGGCATAGCGGAGGGGGCATACATAGAACTAAAGACCAACCGC
CGGGGGATTTATGATTCGCTGCCGGAGGGATTGTTCCATGAGGCGCTTTTTCCCGGCAAGGTGAAAGATTTGGAACTGAT
TTTGGAGGAGATGCAGCAGCATCGCAACGAAGAGTTCTTTATCCGCCGCTTTTTCAGCCTGCTGGAGAGTGAAGTGGACA
GAGAAGGGATACAGGCACAATTGCTCGAATTGCGGTATGATAAAAAGAACAAATATTCTGATTATGCGAAACTCTTTGCC
GCTTGCTGGCCGGTCATTCATATTTTGTCCGGACAGGGGGCGTTGCTGTTCATCAAGTTCATGCCGCATATCCATTCGAT
CCGGGGCAGACTGGAAGAGGTAAGCGACGCACTGTCGCAGATTCTGGAAGCTCCGGTCAAGGTACGCCCCAAAATGGTGC
AACGGACAATAAGGGCACAAAAACCGAACCGGCTGGGGAACATGAGACTGGGAGCAAACAGTGTGAATGTGGGGGTGCTT
AATAGTGCTGAGGCTGATTTGCATATACACATAGGCGACCTGCCAACTCGGGAAGTCGAAAGGTTCCTGCCCGGCAACCG
CTCCCGCAAAGCCCTTGAAATGCTGGCGGATATTTTTCTTGGCGCGTGGCAGGAGTTCGATGTGACGGTCAGCGTTAGCC
CTGACGAACGCAAGACTTATTTAAAACCGACGGGTGACGCCAGTCCGTGTTACCTCGGGATAAACACTTATTTATAA