Detailed information of component protein


Summary

Component ID T6CP011100
Component protein type TssP
T6SS ID (Type) T6SS00910 experimental (Type iii)
Strain Flavobacterium johnsoniae UW101
Replicon chromosome
Sequence Protein sequence (351 a.a.); Nucleotide sequence (1053 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) FJOH_RS17005
Coordinate (Strand) 3919581..3920633 (+)
NCBI ID WP_012025265.1
RefSeq NC_009441
Uniprot ID A5FES2_FLAJ1
KEGG ID fjo:Fjoh_3280
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PKD_4 PF18911.2 6.1e-10 57..106
PKD_4 PF18911.2 9.9e-05 126..183
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-8 MNQKNIDI
Transmembrane helix 9-31 RVVFFFAILLLAGIIAFIVQLFN
Outside 32-350 HVDCDDAKFYIFADHSQSEESIEFYDKTPNAKSWIWDFGDGSEKDVRKHTFHIYKNPGKYYVSLTINGNCTHTKEITIKDKFAADKIGTPKIIVPKTITVGQPAYFKSISDDARTWEWAFGENKGIDETSSNPVYSFITPGEKTITLVINGDFSRVAKKIIYVHPRVIKKTNPLDVSSYEFEKKAEAFALPRGPVKKDPLEEMLQYVPVAPKAKTVKDTVATTKKAPKMSEDQFEILFKKVAEGSKVKDDFAEFLCDDLDIPVVKNDKDLLTFAQLCASVKGKKIKIESIRLNKDKQTNCIKGLNISYKVKKYLVWSKD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9851 - -


  Protein sequence: 351 a.a.    

>T6CP011100 NC_009441:3919581-3920633 [Flavobacterium johnsoniae UW101] [TssP]
MNQKNIDIRVVFFFAILLLAGIIAFIVQLFNHVDCDDAKFYIFADHSQSEESIEFYDKTPNAKSWIWDFGDGSEKDVRKH
TFHIYKNPGKYYVSLTINGNCTHTKEITIKDKFAADKIGTPKIIVPKTITVGQPAYFKSISDDARTWEWAFGENKGIDET
SSNPVYSFITPGEKTITLVINGDFSRVAKKIIYVHPRVIKKTNPLDVSSYEFEKKAEAFALPRGPVKKDPLEEMLQYVPV
APKAKTVKDTVATTKKAPKMSEDQFEILFKKVAEGSKVKDDFAEFLCDDLDIPVVKNDKDLLTFAQLCASVKGKKIKIES
IRLNKDKQTNCIKGLNISYKVKKYLVWSKD*

  Nucleotide sequence: 1053 bp    

>T6CP011100 NC_009441:3919581-3920633 [Flavobacterium johnsoniae UW101] [TssP]
ATGAATCAAAAAAATATTGATATCAGGGTTGTGTTTTTTTTCGCAATTCTCTTATTAGCTGGAATCATTGCATTTATAGT
GCAGCTTTTTAATCATGTCGACTGTGATGATGCTAAATTTTATATTTTTGCAGACCATTCTCAATCCGAAGAATCGATTG
AGTTTTACGACAAAACTCCAAACGCAAAATCATGGATTTGGGACTTTGGAGACGGATCAGAAAAAGATGTCAGAAAACAC
ACTTTTCACATCTATAAAAATCCGGGAAAATACTATGTTTCTTTAACAATAAACGGTAATTGCACCCATACAAAAGAGAT
CACGATAAAGGATAAATTTGCTGCAGATAAAATAGGCACTCCAAAAATTATTGTACCCAAAACTATTACTGTTGGACAGC
CCGCTTATTTTAAATCAATTTCTGATGATGCCAGAACCTGGGAATGGGCATTTGGTGAAAATAAAGGCATTGATGAAACC
TCTTCTAATCCTGTTTACAGCTTTATCACGCCGGGCGAAAAAACGATTACTTTAGTCATAAACGGAGATTTCAGCCGTGT
GGCAAAAAAGATAATTTATGTGCATCCACGAGTTATAAAAAAGACGAATCCGCTGGATGTAAGCTCTTATGAATTTGAGA
AAAAAGCCGAAGCTTTTGCTTTGCCAAGAGGACCTGTTAAAAAAGATCCGCTTGAAGAAATGCTGCAATATGTTCCGGTT
GCTCCAAAAGCAAAAACTGTAAAAGACACTGTTGCCACGACTAAAAAAGCACCTAAAATGTCTGAAGACCAGTTTGAAAT
TTTGTTTAAAAAAGTAGCCGAAGGCAGTAAAGTTAAAGATGATTTTGCTGAGTTTTTATGTGATGATCTGGATATTCCGG
TTGTAAAAAATGATAAAGATCTCTTAACTTTTGCACAATTATGTGCTTCTGTAAAAGGAAAAAAAATAAAAATTGAGTCA
ATACGCTTAAACAAGGACAAACAAACTAACTGCATTAAAGGATTAAATATCAGCTATAAAGTAAAAAAATATCTGGTATG
GTCTAAAGATTAA