Detailed information of component protein


Summary

Component ID T6CP011097
Component protein type TssK
T6SS ID (Type) T6SS00910 experimental (Type iii)
Strain Flavobacterium johnsoniae UW101
Replicon chromosome
Sequence Protein sequence (390 a.a.); Nucleotide sequence (1170 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) FJOH_RS16950
Coordinate (Strand) 3907083..3908252 (-)
NCBI ID WP_012025254.1
RefSeq NC_009441
Uniprot ID A5FET0_FLAJ1, A0A1M5MUH7_FLAJO
KEGG ID fjo:Fjoh_3269
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-389 MIEKLNHFPVNWIDGMKINKSHFLSIQDNVSELVNDAIGIHTTPISYGLLDSGNQNKEATKITLGIDNHKLLRVRVEECHAITPNGSRIEISKSNTDTLDLQVPYPEDTYEIKDGEQLVLLACISVNSKKRIPFGEPDPDEVPPRYPYTQPEYKLHLIKAEEFRSGIGYGGFYLAIGKVLIGDTTVLDEDYIPPSVTVACHPKLVDIQAQIARSFGQIEIYSVQISQKINRGQQAGVLPQTVMQLADNTGYYLGSCLTQFRWFSMHQHPASMLSTVVAFARVMKNFIDSKSGAGKEELLNYFAEWCDISQGDLEIMFTTLINAGYDHVHIDKTATLVINALTRIEKLFETLNKLDYIGKKKENIELFVAETEKKDIVHNPKRHGFFIKD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -


  Protein sequence: 390 a.a.    

>T6CP011097 NC_009441:c3908252-3907083 [Flavobacterium johnsoniae UW101] [TssK]
MIEKLNHFPVNWIDGMKINKSHFLSIQDNVSELVNDAIGIHTTPISYGLLDSGNQNKEATKITLGIDNHKLLRVRVEECH
AITPNGSRIEISKSNTDTLDLQVPYPEDTYEIKDGEQLVLLACISVNSKKRIPFGEPDPDEVPPRYPYTQPEYKLHLIKA
EEFRSGIGYGGFYLAIGKVLIGDTTVLDEDYIPPSVTVACHPKLVDIQAQIARSFGQIEIYSVQISQKINRGQQAGVLPQ
TVMQLADNTGYYLGSCLTQFRWFSMHQHPASMLSTVVAFARVMKNFIDSKSGAGKEELLNYFAEWCDISQGDLEIMFTTL
INAGYDHVHIDKTATLVINALTRIEKLFETLNKLDYIGKKKENIELFVAETEKKDIVHNPKRHGFFIKD*

  Nucleotide sequence: 1170 bp    

>T6CP011097 NC_009441:c3908252-3907083 [Flavobacterium johnsoniae UW101] [TssK]
ATGATAGAAAAATTAAATCATTTTCCCGTAAACTGGATTGATGGGATGAAGATAAATAAGAGTCATTTTTTATCTATTCA
GGACAACGTTTCTGAGTTGGTAAATGATGCAATTGGTATTCATACCACGCCTATAAGTTATGGTCTGCTGGATTCTGGAA
ACCAAAATAAAGAGGCCACAAAAATCACCTTAGGAATTGATAATCACAAACTGCTTCGTGTTCGTGTAGAAGAATGCCAC
GCCATAACACCAAACGGATCCAGAATTGAAATCAGTAAAAGTAATACTGATACATTAGACCTTCAGGTTCCGTATCCTGA
AGATACTTATGAAATAAAAGACGGCGAACAATTGGTTTTATTGGCCTGTATATCGGTTAATTCAAAAAAGAGAATCCCTT
TTGGCGAGCCAGATCCAGATGAAGTACCGCCAAGATATCCGTACACACAGCCAGAATACAAACTTCATTTAATTAAAGCC
GAAGAATTCCGTTCAGGAATTGGATATGGAGGTTTCTATCTTGCTATTGGTAAAGTTCTTATTGGAGATACAACAGTTTT
AGATGAAGATTATATTCCGCCTTCTGTAACAGTGGCTTGTCATCCAAAATTAGTAGATATACAAGCACAAATTGCACGTT
CTTTTGGTCAAATTGAAATTTACTCAGTTCAGATTTCTCAAAAAATAAACAGAGGACAACAGGCAGGAGTTTTGCCTCAA
ACAGTAATGCAGCTGGCAGATAATACAGGATATTATTTAGGAAGCTGTTTAACGCAATTCCGCTGGTTTTCAATGCACCA
GCATCCAGCTTCAATGTTAAGTACGGTTGTAGCATTTGCCAGAGTGATGAAGAATTTTATCGATTCAAAATCGGGAGCTG
GAAAAGAAGAGCTGCTAAATTATTTTGCCGAATGGTGTGATATTTCACAAGGAGATCTTGAAATAATGTTTACCACTCTT
ATAAATGCCGGTTACGATCACGTGCATATTGATAAAACTGCTACGCTTGTAATAAATGCTTTAACGAGAATAGAGAAACT
ATTCGAAACACTGAATAAACTGGATTACATCGGTAAGAAAAAAGAAAACATCGAATTGTTTGTTGCCGAAACAGAGAAAA
AAGACATCGTTCATAATCCAAAACGTCACGGTTTCTTTATAAAAGATTAA