Detailed information of component protein
Summary
| Component ID | T6CP011095 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00910  (Type iii) |
| Strain | Flavobacterium johnsoniae UW101 |
| Replicon | chromosome |
| Sequence | Protein sequence (150 a.a.); Nucleotide sequence (450 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | FJOH_RS16940 |
| Coordinate (Strand) | 3906041..3906490 (-) |
| NCBI ID | WP_012025252.1 |
| RefSeq | NC_009441 |
| Uniprot ID | UPI00006E8D9A |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-149 | MLSNYGIGGNEVKIDADEAITAIPQNRTLVAQKLTVDAPVKPELVEGITSIEKAFEHFKPEVKVNFETADGATKVEPLNFKNLGDFGIKGITTQSSFLSDLETEKDQYQKIIRQLKSNKILKAALEDGEAKQALLESLGALINELKENK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9851 | - | - |
Protein sequence: 150 a.a.
>T6CP011095 NC_009441:c3906490-3906041 [Flavobacterium johnsoniae UW101] [TssB]
MLSNYGIGGNEVKIDADEAITAIPQNRTLVAQKLTVDAPVKPELVEGITSIEKAFEHFKPEVKVNFETADGATKVEPLNF
KNLGDFGIKGITTQSSFLSDLETEKDQYQKIIRQLKSNKILKAALEDGEAKQALLESLGALINELKENK*
MLSNYGIGGNEVKIDADEAITAIPQNRTLVAQKLTVDAPVKPELVEGITSIEKAFEHFKPEVKVNFETADGATKVEPLNF
KNLGDFGIKGITTQSSFLSDLETEKDQYQKIIRQLKSNKILKAALEDGEAKQALLESLGALINELKENK*
Nucleotide sequence: 450 bp
>T6CP011095 NC_009441:c3906490-3906041 [Flavobacterium johnsoniae UW101] [TssB]
ATGTTGTCAAACTATGGAATTGGAGGTAATGAAGTAAAAATTGATGCAGATGAAGCGATCACTGCAATCCCTCAGAACAG
AACACTTGTTGCTCAAAAATTAACAGTAGATGCTCCTGTAAAACCAGAATTGGTAGAAGGAATTACAAGTATCGAAAAAG
CATTTGAACATTTTAAACCAGAAGTAAAAGTAAATTTTGAAACTGCTGATGGTGCAACTAAAGTTGAGCCTTTAAACTTT
AAAAACTTAGGTGATTTTGGTATAAAAGGAATTACAACACAAAGCAGTTTTTTATCTGATCTTGAAACAGAAAAAGATCA
ATATCAAAAAATTATCCGTCAGTTAAAATCAAATAAGATTTTAAAAGCGGCTTTAGAAGACGGAGAAGCAAAACAGGCTT
TGTTAGAAAGTCTTGGAGCACTGATCAACGAGTTAAAAGAAAACAAATAA
ATGTTGTCAAACTATGGAATTGGAGGTAATGAAGTAAAAATTGATGCAGATGAAGCGATCACTGCAATCCCTCAGAACAG
AACACTTGTTGCTCAAAAATTAACAGTAGATGCTCCTGTAAAACCAGAATTGGTAGAAGGAATTACAAGTATCGAAAAAG
CATTTGAACATTTTAAACCAGAAGTAAAAGTAAATTTTGAAACTGCTGATGGTGCAACTAAAGTTGAGCCTTTAAACTTT
AAAAACTTAGGTGATTTTGGTATAAAAGGAATTACAACACAAAGCAGTTTTTTATCTGATCTTGAAACAGAAAAAGATCA
ATATCAAAAAATTATCCGTCAGTTAAAATCAAATAAGATTTTAAAAGCGGCTTTAGAAGACGGAGAAGCAAAACAGGCTT
TGTTAGAAAGTCTTGGAGCACTGATCAACGAGTTAAAAGAAAACAAATAA