Detailed information of component protein
Summary
| Component ID | T6CP011093 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00910  (Type iii) |
| Strain | Flavobacterium johnsoniae UW101 |
| Replicon | chromosome |
| Sequence | Protein sequence (144 a.a.); Nucleotide sequence (432 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | FJOH_RS16920 |
| Coordinate (Strand) | 3902805..3903236 (-) |
| NCBI ID | WP_012025248.1 |
| RefSeq | NC_009441 |
| Uniprot ID | A5FET9_FLAJ1, A0A1M6UNG0_FLAJO |
| KEGG ID | fjo:Fjoh_3263 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.6e-11 | 25..126 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-143 | MKGAFYKLPIDFNSVMQKKELEKTSIEHSIAQQIILLATTTFGECKFDETFGSKIWEIDFDLLMNENTLKEIISKTMKQSLLFHEKRIKVNELKVELSETMYLVDDVSRAKKKVDIIIEATIKSTNRDFDFRGYFFVGPLSYK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9879 | - | - |
Protein sequence: 144 a.a.
>T6CP011093 NC_009441:c3903236-3902805 [Flavobacterium johnsoniae UW101] [TssE]
MKGAFYKLPIDFNSVMQKKELEKTSIEHSIAQQIILLATTTFGECKFDETFGSKIWEIDFDLLMNENTLKEIISKTMKQS
LLFHEKRIKVNELKVELSETMYLVDDVSRAKKKVDIIIEATIKSTNRDFDFRGYFFVGPLSYK*
MKGAFYKLPIDFNSVMQKKELEKTSIEHSIAQQIILLATTTFGECKFDETFGSKIWEIDFDLLMNENTLKEIISKTMKQS
LLFHEKRIKVNELKVELSETMYLVDDVSRAKKKVDIIIEATIKSTNRDFDFRGYFFVGPLSYK*
Nucleotide sequence: 432 bp
>T6CP011093 NC_009441:c3903236-3902805 [Flavobacterium johnsoniae UW101] [TssE]
ATGAAAGGAGCATTTTACAAACTGCCTATAGACTTTAACAGCGTCATGCAAAAAAAGGAGCTGGAAAAAACATCAATAGA
ACACTCTATCGCACAGCAGATTATTTTATTGGCTACAACCACATTTGGAGAATGTAAGTTTGATGAAACGTTTGGCTCAA
AAATCTGGGAGATTGATTTTGATTTGCTGATGAATGAAAATACCCTCAAAGAAATCATTTCAAAAACAATGAAACAATCG
CTTCTTTTTCATGAAAAAAGAATAAAAGTAAATGAACTGAAGGTAGAATTATCTGAAACAATGTATCTGGTTGATGATGT
GAGCAGAGCTAAAAAGAAAGTTGATATTATAATTGAAGCCACTATTAAAAGTACAAACAGAGATTTTGATTTTAGAGGCT
ATTTTTTCGTTGGGCCTTTATCATATAAATAG
ATGAAAGGAGCATTTTACAAACTGCCTATAGACTTTAACAGCGTCATGCAAAAAAAGGAGCTGGAAAAAACATCAATAGA
ACACTCTATCGCACAGCAGATTATTTTATTGGCTACAACCACATTTGGAGAATGTAAGTTTGATGAAACGTTTGGCTCAA
AAATCTGGGAGATTGATTTTGATTTGCTGATGAATGAAAATACCCTCAAAGAAATCATTTCAAAAACAATGAAACAATCG
CTTCTTTTTCATGAAAAAAGAATAAAAGTAAATGAACTGAAGGTAGAATTATCTGAAACAATGTATCTGGTTGATGATGT
GAGCAGAGCTAAAAAGAAAGTTGATATTATAATTGAAGCCACTATTAAAAGTACAAACAGAGATTTTGATTTTAGAGGCT
ATTTTTTCGTTGGGCCTTTATCATATAAATAG