Detailed information of component protein
Summary
| Component ID | T6CP011092 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00910  (Type iii) |
| Strain | Flavobacterium johnsoniae UW101 |
| Replicon | chromosome |
| Sequence | Protein sequence (129 a.a.); Nucleotide sequence (387 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | FJOH_RS16915 |
| Coordinate (Strand) | 3902237..3902623 (-) |
| NCBI ID | WP_012025247.1 |
| RefSeq | NC_009441 |
| Uniprot ID | A0A3D9S5U5_9FLAO, A0A3L9YD50_9FLAO, A0A7K1FY81_9FLAO, A5FET8_FLAJ1, A0A1M6UNC2_FLAJO |
| KEGG ID | fjo:Fjoh_3262 |
| PDB ID | 6BDC |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 2.2e-48 | 1..128 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-128 | MSFLTSLTVAGKDYKVLNVSYDLAQETDASGRPSTVTRGGRIMIEVESTGSTELFEWMTNNFERKDGSVKFIKRDSNATLKELKFTEAYMVKYKENFDHNSENPLTETFMISARKISMGGGEFDNAWV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9165 | - | - |
Protein sequence: 129 a.a.
>T6CP011092 NC_009441:c3902623-3902237 [Flavobacterium johnsoniae UW101] [TssD]
MSFLTSLTVAGKDYKVLNVSYDLAQETDASGRPSTVTRGGRIMIEVESTGSTELFEWMTNNFERKDGSVKFIKRDSNATL
KELKFTEAYMVKYKENFDHNSENPLTETFMISARKISMGGGEFDNAWV*
MSFLTSLTVAGKDYKVLNVSYDLAQETDASGRPSTVTRGGRIMIEVESTGSTELFEWMTNNFERKDGSVKFIKRDSNATL
KELKFTEAYMVKYKENFDHNSENPLTETFMISARKISMGGGEFDNAWV*
Nucleotide sequence: 387 bp
>T6CP011092 NC_009441:c3902623-3902237 [Flavobacterium johnsoniae UW101] [TssD]
ATGTCGTTTTTAACATCATTAACAGTAGCAGGAAAAGATTACAAAGTATTAAACGTAAGTTATGATTTAGCTCAAGAAAC
AGATGCTTCTGGGCGTCCATCTACGGTAACACGCGGAGGAAGAATCATGATCGAAGTTGAATCAACTGGAAGTACTGAAT
TATTTGAATGGATGACTAACAATTTCGAAAGAAAAGACGGGTCAGTAAAATTCATCAAACGTGATTCAAATGCTACTTTA
AAAGAGCTAAAGTTTACAGAGGCTTACATGGTTAAGTACAAAGAAAACTTTGATCATAACAGTGAAAATCCATTAACTGA
AACTTTTATGATTTCTGCTCGTAAAATTTCGATGGGTGGAGGAGAATTTGATAATGCTTGGGTATAA
ATGTCGTTTTTAACATCATTAACAGTAGCAGGAAAAGATTACAAAGTATTAAACGTAAGTTATGATTTAGCTCAAGAAAC
AGATGCTTCTGGGCGTCCATCTACGGTAACACGCGGAGGAAGAATCATGATCGAAGTTGAATCAACTGGAAGTACTGAAT
TATTTGAATGGATGACTAACAATTTCGAAAGAAAAGACGGGTCAGTAAAATTCATCAAACGTGATTCAAATGCTACTTTA
AAAGAGCTAAAGTTTACAGAGGCTTACATGGTTAAGTACAAAGAAAACTTTGATCATAACAGTGAAAATCCATTAACTGA
AACTTTTATGATTTCTGCTCGTAAAATTTCGATGGGTGGAGGAGAATTTGATAATGCTTGGGTATAA