Detailed information of component protein
Summary
| Component ID | T6CP011091 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00910  (Type iii) |
| Strain | Flavobacterium johnsoniae UW101 |
| Replicon | chromosome |
| Sequence | Protein sequence (132 a.a.); Nucleotide sequence (396 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | FJOH_RS16910 |
| Coordinate (Strand) | 3901691..3902086 (-) |
| NCBI ID | WP_012025246.1 |
| RefSeq | NC_009441 |
| Uniprot ID | A5FET7_FLAJ1, A0A1M5MV81_FLAJO |
| KEGG ID | fjo:Fjoh_3261 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 9.6e-44 | 1..127 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-131 | MSFLSKLHIDGEEYNVLEFNIGFKQEIDTTSKPTGNAKGGVIRMIIEASQNSHFLSWMLNGDLTKDGKIVFYRRDALSKMKELTFTKAFCVGYDEQFTSTTEIPMRITMELVAKELTFGDAKFSNNWIALD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9947 | - | - |
Protein sequence: 132 a.a.
>T6CP011091 NC_009441:c3902086-3901691 [Flavobacterium johnsoniae UW101] [TssD]
MSFLSKLHIDGEEYNVLEFNIGFKQEIDTTSKPTGNAKGGVIRMIIEASQNSHFLSWMLNGDLTKDGKIVFYRRDALSKM
KELTFTKAFCVGYDEQFTSTTEIPMRITMELVAKELTFGDAKFSNNWIALD*
MSFLSKLHIDGEEYNVLEFNIGFKQEIDTTSKPTGNAKGGVIRMIIEASQNSHFLSWMLNGDLTKDGKIVFYRRDALSKM
KELTFTKAFCVGYDEQFTSTTEIPMRITMELVAKELTFGDAKFSNNWIALD*
Nucleotide sequence: 396 bp
>T6CP011091 NC_009441:c3902086-3901691 [Flavobacterium johnsoniae UW101] [TssD]
ATGAGTTTTTTATCTAAATTACATATAGACGGAGAAGAATATAATGTTCTTGAATTTAATATTGGTTTTAAACAAGAAAT
TGATACAACAAGTAAACCTACCGGTAATGCAAAAGGCGGGGTTATAAGAATGATTATTGAAGCAAGTCAGAATAGCCATT
TTTTATCATGGATGTTAAATGGTGATTTAACCAAAGACGGAAAAATTGTTTTTTACAGAAGAGATGCTTTAAGTAAAATG
AAAGAACTTACGTTTACTAAGGCATTTTGTGTCGGTTATGATGAACAGTTTACAAGCACTACCGAAATACCAATGAGAAT
TACTATGGAGCTAGTAGCAAAAGAATTGACTTTTGGCGACGCTAAATTCTCAAACAATTGGATTGCTTTAGATTAA
ATGAGTTTTTTATCTAAATTACATATAGACGGAGAAGAATATAATGTTCTTGAATTTAATATTGGTTTTAAACAAGAAAT
TGATACAACAAGTAAACCTACCGGTAATGCAAAAGGCGGGGTTATAAGAATGATTATTGAAGCAAGTCAGAATAGCCATT
TTTTATCATGGATGTTAAATGGTGATTTAACCAAAGACGGAAAAATTGTTTTTTACAGAAGAGATGCTTTAAGTAAAATG
AAAGAACTTACGTTTACTAAGGCATTTTGTGTCGGTTATGATGAACAGTTTACAAGCACTACCGAAATACCAATGAGAAT
TACTATGGAGCTAGTAGCAAAAGAATTGACTTTTGGCGACGCTAAATTCTCAAACAATTGGATTGCTTTAGATTAA