Detailed information of component protein


Summary

Component ID T6CP011089
Component protein type TssF
T6SS ID (Type) T6SS00910 experimental (Type iii)
Strain Flavobacterium johnsoniae UW101
Replicon chromosome
Sequence Protein sequence (612 a.a.); Nucleotide sequence (1836 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) FJOH_RS16870
Coordinate (Strand) 3892562..3894397 (-)
NCBI ID WP_012025239.1
RefSeq NC_009441
Uniprot ID A5FEU5_FLAJ1
KEGG ID fjo:Fjoh_3254
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.9e-07 26..318
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-611 MRQDRIKDRVLKRAARSWGFSDVEMETSFDPVVSMMLNALSYELEKVAHELEDSKTRVVERVLEIMFPEVTAGVKPARAILHALPIENGMKVSLQNQMSASRRIHNIYNPLAPITKEIALSPTLEVKLSSAEIKYVAYERNLFEISNLFYKDAIRDYKHSLPSGVVFLGIELTNPKVEEIEDLMLYIDIKNTHQKEMFHYYLKQMKCFQDDVQITVEEGYNVPVNNIDIENIINRNYTHLSEIMQEVNEFYFDNFYTLKGSLKHKAINEYSEEYKYFEAVTSGNDNPIIWVKMIFPESLIPQILDNVSFTANCFPVINKKKHIINKTLGNFLSYIALETDNNIYLDVDTVIDGFNNHYEIKEFKDGVIEEGNAVLRTGGVSRFDSRSASELLQNVLDLLKDESSSFAGLGKDFMNSSLVEINQLLASVEQQARESSFSKNNDPYLMIKPKFDESIGKSFSIHYWSTCAEEGNDIKAGTVLEAKDDMLFVSKESVLITNTVGGMNKQNNKDRILAYRNALLTRGRIVTFADIKAFGFNHFKSCITDIRIEKGTRKEISVKAGFSRTVDIHLQVNPVEKDYLSETEWDYLCDSFMKQLKNRSSNVFPYRIFVN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9932 - -


  Protein sequence: 612 a.a.    

>T6CP011089 NC_009441:c3894397-3892562 [Flavobacterium johnsoniae UW101] [TssF]
MRQDRIKDRVLKRAARSWGFSDVEMETSFDPVVSMMLNALSYELEKVAHELEDSKTRVVERVLEIMFPEVTAGVKPARAI
LHALPIENGMKVSLQNQMSASRRIHNIYNPLAPITKEIALSPTLEVKLSSAEIKYVAYERNLFEISNLFYKDAIRDYKHS
LPSGVVFLGIELTNPKVEEIEDLMLYIDIKNTHQKEMFHYYLKQMKCFQDDVQITVEEGYNVPVNNIDIENIINRNYTHL
SEIMQEVNEFYFDNFYTLKGSLKHKAINEYSEEYKYFEAVTSGNDNPIIWVKMIFPESLIPQILDNVSFTANCFPVINKK
KHIINKTLGNFLSYIALETDNNIYLDVDTVIDGFNNHYEIKEFKDGVIEEGNAVLRTGGVSRFDSRSASELLQNVLDLLK
DESSSFAGLGKDFMNSSLVEINQLLASVEQQARESSFSKNNDPYLMIKPKFDESIGKSFSIHYWSTCAEEGNDIKAGTVL
EAKDDMLFVSKESVLITNTVGGMNKQNNKDRILAYRNALLTRGRIVTFADIKAFGFNHFKSCITDIRIEKGTRKEISVKA
GFSRTVDIHLQVNPVEKDYLSETEWDYLCDSFMKQLKNRSSNVFPYRIFVN*

  Nucleotide sequence: 1836 bp    

>T6CP011089 NC_009441:c3894397-3892562 [Flavobacterium johnsoniae UW101] [TssF]
ATGAGACAAGATCGAATAAAAGACAGAGTGCTAAAAAGAGCGGCTAGATCATGGGGCTTTTCTGATGTTGAGATGGAAAC
ATCATTTGATCCTGTTGTATCAATGATGCTTAATGCATTGTCTTACGAATTAGAAAAAGTAGCCCACGAACTCGAAGACT
CTAAAACAAGAGTTGTAGAAAGAGTTCTGGAAATTATGTTTCCTGAAGTTACAGCAGGAGTAAAACCTGCACGAGCCATT
TTACATGCTTTACCAATAGAGAATGGTATGAAAGTTTCATTGCAGAACCAAATGTCGGCAAGTCGAAGAATTCATAATAT
TTACAATCCTTTAGCACCAATTACTAAAGAGATCGCTTTATCGCCAACGTTAGAAGTAAAGCTGTCTTCGGCAGAAATAA
AATATGTAGCTTATGAACGCAATTTGTTCGAAATTTCGAATCTTTTTTATAAAGATGCCATACGAGATTACAAACATTCA
CTGCCTTCAGGTGTTGTGTTCTTAGGAATTGAATTAACGAATCCGAAAGTTGAAGAGATAGAAGATTTAATGTTGTATAT
CGACATTAAAAATACACATCAGAAAGAGATGTTTCATTACTATTTAAAGCAAATGAAATGCTTTCAGGATGATGTGCAGA
TTACAGTAGAAGAAGGCTATAATGTTCCTGTAAACAATATAGACATTGAGAATATTATCAACCGTAATTACACACATTTG
AGTGAAATTATGCAGGAGGTAAATGAATTTTATTTTGATAATTTCTATACCCTGAAAGGTTCTTTAAAGCACAAAGCAAT
TAATGAATACAGTGAAGAATATAAATATTTTGAAGCTGTAACCAGCGGAAATGACAATCCTATTATTTGGGTAAAAATGA
TTTTCCCGGAATCGCTGATTCCTCAAATATTAGATAACGTTTCTTTTACAGCAAATTGCTTTCCGGTAATCAACAAAAAG
AAACACATTATAAATAAAACGCTTGGTAACTTCTTATCCTATATTGCATTAGAAACAGATAACAATATTTATCTCGATGT
TGACACTGTTATCGATGGATTCAATAATCATTATGAGATAAAAGAATTTAAAGATGGTGTAATTGAAGAAGGAAATGCTG
TATTACGAACAGGCGGAGTTTCCAGATTCGATTCAAGAAGCGCATCAGAATTGCTTCAAAATGTATTAGACTTACTAAAA
GACGAAAGTTCTTCTTTTGCTGGTTTAGGTAAAGATTTTATGAACAGCTCTTTAGTCGAAATCAATCAGCTCTTAGCTTC
TGTAGAACAGCAGGCAAGAGAAAGCAGCTTTTCTAAAAATAATGATCCTTATTTAATGATTAAGCCAAAGTTTGATGAAT
CTATAGGAAAATCATTTTCTATACATTACTGGTCAACATGTGCCGAAGAAGGAAACGATATAAAAGCAGGAACAGTTTTA
GAGGCCAAAGATGACATGCTTTTTGTAAGCAAAGAGTCGGTGCTGATTACAAATACTGTTGGCGGTATGAACAAACAGAA
TAACAAAGACCGTATTTTAGCGTACAGAAATGCTTTGCTGACACGCGGCCGAATTGTAACATTTGCTGATATAAAAGCTT
TTGGATTTAATCATTTCAAAAGTTGTATAACAGACATTAGAATAGAAAAAGGCACGCGAAAAGAAATATCTGTAAAAGCT
GGTTTCAGTCGTACAGTAGATATTCATCTGCAGGTAAACCCTGTTGAAAAAGATTATTTATCAGAAACAGAATGGGATTA
TTTATGCGATAGTTTTATGAAACAGCTCAAAAACAGATCCTCAAATGTGTTTCCTTATCGAATATTTGTAAATTAA