Detailed information of component protein


Summary

Component ID T6CP011056
Component protein type TssC
T6SS ID (Type) T6SS00907 experimental (Type iii)
Strain Bacteroides fragilis NCTC 9343
Replicon chromosome
Sequence Protein sequence (460 a.a.); Nucleotide sequence (1380 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF9343_RS09470
Coordinate (Strand) 2368371..2369750 (-)
NCBI ID 492268131
RefSeq NC_003228
Uniprot ID A0A015U2B0_BACFG, Q5LDT3_BACFN, A0A0E2B0I0_BACFG
KEGG ID bfs:BF9343_1941
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssC PF17541.4 3.4e-235 31..458
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-459 MEDNKNKSEVQAQETVQVSYKEKNRESSLASALDVLSRFGGFNFLESTVDGVQNLNPERKARKKIFLTDEQKQEEREVLKNKIDMWIDLLNSSSAVTEMIATSKAKSEAAASHLAKSQLVAVQSVRDMEQAYRGVMLFYKNTEADKVNNVTIVNASKEQLTDLDNPRFIDFVARELKQNYDKLDLRQNYSLLAIPGYLGSNKVLEKWAKIAYENKVMLYTDFADLDKPEDVVELFSSSNMASGEAFKSNTCMTCNWLVGRAGYREIGEEEDLHVSPSIALMGKVYTTLMSQVTAGKKYGGINEIDAVVFPLKKSEISQLEKMGLIPMVNEYGKVMAFSAKTLFNGDNLGLQTYSVVRVFDYITKVLFDFLNRRSFENWSSKTERDLRGQIVQYLDSVQGADRLIEKFKIIRFEQDQKQKDRIYLDIHMTPFFPAKSFVIKLDGTKGDDGTNWNTNYEQA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9830 - -


  Protein sequence: 460 a.a.    

>T6CP011056 NC_003228:c2369750-2368371 [Bacteroides fragilis NCTC 9343] [TssC]
MEDNKNKSEVQAQETVQVSYKEKNRESSLASALDVLSRFGGFNFLESTVDGVQNLNPERKARKKIFLTDEQKQEEREVLK
NKIDMWIDLLNSSSAVTEMIATSKAKSEAAASHLAKSQLVAVQSVRDMEQAYRGVMLFYKNTEADKVNNVTIVNASKEQL
TDLDNPRFIDFVARELKQNYDKLDLRQNYSLLAIPGYLGSNKVLEKWAKIAYENKVMLYTDFADLDKPEDVVELFSSSNM
ASGEAFKSNTCMTCNWLVGRAGYREIGEEEDLHVSPSIALMGKVYTTLMSQVTAGKKYGGINEIDAVVFPLKKSEISQLE
KMGLIPMVNEYGKVMAFSAKTLFNGDNLGLQTYSVVRVFDYITKVLFDFLNRRSFENWSSKTERDLRGQIVQYLDSVQGA
DRLIEKFKIIRFEQDQKQKDRIYLDIHMTPFFPAKSFVIKLDGTKGDDGTNWNTNYEQA*

  Nucleotide sequence: 1380 bp    

>T6CP011056 NC_003228:c2369750-2368371 [Bacteroides fragilis NCTC 9343] [TssC]
ATGGAAGATAATAAAAATAAGTCTGAAGTTCAGGCGCAAGAAACCGTTCAAGTTTCCTATAAAGAGAAAAACAGGGAATC
CTCTCTGGCTTCGGCACTGGATGTGTTGTCCAGATTCGGCGGTTTCAATTTTCTGGAATCAACAGTAGATGGTGTTCAGA
ACCTGAACCCCGAGCGTAAGGCACGCAAAAAGATATTCTTAACCGATGAACAGAAGCAAGAAGAACGGGAAGTGCTGAAG
AATAAGATAGATATGTGGATCGACCTGCTGAACTCATCATCGGCAGTGACGGAAATGATTGCCACTTCTAAAGCTAAATC
GGAAGCTGCCGCATCGCATCTTGCCAAAAGCCAATTGGTGGCAGTGCAGAGTGTGAGGGATATGGAACAGGCATACCGTG
GAGTGATGTTGTTCTATAAGAATACGGAAGCGGACAAAGTGAACAACGTGACGATAGTCAATGCTTCCAAAGAACAACTG
ACCGACCTCGACAATCCCCGCTTCATTGATTTCGTTGCCCGCGAACTGAAACAGAACTATGACAAGTTGGATTTACGTCA
AAATTACTCACTGTTAGCCATTCCGGGCTATCTTGGTTCGAATAAGGTACTTGAAAAATGGGCGAAAATCGCTTATGAAA
ATAAAGTGATGCTCTATACGGACTTTGCCGACCTTGATAAGCCGGAAGATGTGGTGGAACTGTTCTCTTCCTCCAATATG
GCAAGTGGGGAGGCCTTCAAAAGCAATACCTGCATGACCTGCAACTGGCTGGTGGGACGTGCCGGATACCGGGAAATCGG
TGAAGAGGAAGACCTCCATGTTTCTCCGTCCATTGCTTTGATGGGTAAAGTTTACACCACTCTGATGTCTCAGGTAACTG
CCGGTAAGAAGTATGGCGGCATTAATGAAATAGATGCGGTGGTATTCCCGTTGAAGAAAAGCGAAATCTCACAACTGGAG
AAAATGGGTTTAATTCCGATGGTCAATGAATATGGTAAAGTGATGGCGTTCTCCGCAAAGACATTGTTCAACGGTGACAA
TCTGGGATTGCAAACTTATTCTGTGGTACGTGTATTCGACTATATTACCAAGGTATTGTTTGATTTCCTGAACCGCCGTT
CGTTCGAGAACTGGAGTTCTAAAACCGAACGTGACCTGAGAGGGCAGATTGTACAGTATCTTGATAGTGTACAGGGAGCC
GACCGCCTTATCGAAAAATTCAAGATAATCCGTTTCGAGCAAGACCAAAAGCAGAAAGACCGTATTTATCTGGATATTCA
CATGACTCCGTTCTTCCCTGCCAAGAGCTTTGTTATCAAGTTGGACGGCACGAAAGGTGATGATGGTACAAACTGGAATA
CAAATTACGAACAGGCGTAA