Detailed information of component protein


Summary

Component ID T6CP011055
Component protein type TssH
T6SS ID (Type) T6SS00907 experimental (Type iii)
Strain Bacteroides fragilis NCTC 9343
Replicon chromosome
Sequence Protein sequence (828 a.a.); Nucleotide sequence (2484 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF9343_RS09465
Coordinate (Strand) 2365875..2368358 (-)
NCBI ID 499302030
RefSeq NC_003228
Uniprot ID Q5LDT4_BACFN
KEGG ID bfs:BF9343_1940
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.2e-42 566..728
AAA_lid_9 PF17871.3 6e-22 351..441
ClpB_D2-small PF10431.11 7.9e-17 735..814
AAA PF00004.31 5.7e-10 212..342
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-827 MDFLNINETVQSVIRISKGVAREYGNASYAPAHLLFALMHKEVGLRSFVESLGKDADYLREWAEVRIEEYPKAAGAGEIMPDGKVNELFEQADNVRIKWGLLEINPLCLLAAIATPEAGFSTDELRSFPIREREIHDLFTSGMGNMKKSVSTQTDLPGSEAPLWTAGAGNLDKYCTDKTALAADKKVYPIVCRDRETRMMMEILGRMGKPNVLIIGDAGVGKTALVDGLACSIIEGTVPQYLKDMTIYELDTGTLIAGATYKGEIEERLKGIIKELSAHGNAILFIDEIHTLIDPKSGNSGAASILKPELAKGNITVIGVTTVDEYRKLIEPDHALNRRFEVLQVSEPDLASTVNMIQAALERYESYHGVGVDVDSLPECVALAKRYVKERRLPDAAIDLIDRTLSAVKMINQSGEKDIKGLAEQLAAIEAAEDQPEAERTEKLRLVNFTMKNRLSPILLGMLSDGQNEPESSDYGEWMDYILGVLDRLRELTKEKIGKITSHEVAAVISSSTGIPIGKIESGEKEKLLNMEDILRRRVVGQDNALKVLTDAIVESRSGMNKPGQPIGSFFLLGPTGTGKTELAKALAEALFNDEKAMIRFDMSEFKEEHSAALLLGAPPGYVGYEEGGVLVNRIRRQPYAVVLFDEIEKAHSSVYDIFLQIMDEGKLHDRLGKEGDFSNSIVLFTSNVGSEWLSKQINEGKNPSTTDLMEVMGSYFRPEFLARLSEIVPFSPINETMLVRIFEIQLKGVIALLEKQHIDIEITEKAKNLLATRGFTPKYGARQVAGTIRNYIRRPISKMIVAGTLAAGNTVVVDVADNGDIDWNVK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9943 - -


  Protein sequence: 828 a.a.    

>T6CP011055 NC_003228:c2368358-2365875 [Bacteroides fragilis NCTC 9343] [TssH]
MDFLNINETVQSVIRISKGVAREYGNASYAPAHLLFALMHKEVGLRSFVESLGKDADYLREWAEVRIEEYPKAAGAGEIM
PDGKVNELFEQADNVRIKWGLLEINPLCLLAAIATPEAGFSTDELRSFPIREREIHDLFTSGMGNMKKSVSTQTDLPGSE
APLWTAGAGNLDKYCTDKTALAADKKVYPIVCRDRETRMMMEILGRMGKPNVLIIGDAGVGKTALVDGLACSIIEGTVPQ
YLKDMTIYELDTGTLIAGATYKGEIEERLKGIIKELSAHGNAILFIDEIHTLIDPKSGNSGAASILKPELAKGNITVIGV
TTVDEYRKLIEPDHALNRRFEVLQVSEPDLASTVNMIQAALERYESYHGVGVDVDSLPECVALAKRYVKERRLPDAAIDL
IDRTLSAVKMINQSGEKDIKGLAEQLAAIEAAEDQPEAERTEKLRLVNFTMKNRLSPILLGMLSDGQNEPESSDYGEWMD
YILGVLDRLRELTKEKIGKITSHEVAAVISSSTGIPIGKIESGEKEKLLNMEDILRRRVVGQDNALKVLTDAIVESRSGM
NKPGQPIGSFFLLGPTGTGKTELAKALAEALFNDEKAMIRFDMSEFKEEHSAALLLGAPPGYVGYEEGGVLVNRIRRQPY
AVVLFDEIEKAHSSVYDIFLQIMDEGKLHDRLGKEGDFSNSIVLFTSNVGSEWLSKQINEGKNPSTTDLMEVMGSYFRPE
FLARLSEIVPFSPINETMLVRIFEIQLKGVIALLEKQHIDIEITEKAKNLLATRGFTPKYGARQVAGTIRNYIRRPISKM
IVAGTLAAGNTVVVDVADNGDIDWNVK*

  Nucleotide sequence: 2484 bp    

>T6CP011055 NC_003228:c2368358-2365875 [Bacteroides fragilis NCTC 9343] [TssH]
ATGGATTTTTTGAACATCAATGAAACAGTTCAGAGCGTAATCCGAATATCAAAAGGTGTCGCCCGTGAGTATGGCAATGC
CAGCTATGCTCCGGCACACCTTTTGTTTGCCTTGATGCACAAAGAGGTAGGTCTGCGTTCGTTTGTCGAATCGTTGGGTA
AGGATGCCGATTACTTGCGCGAATGGGCGGAGGTAAGAATAGAGGAGTACCCCAAGGCTGCCGGTGCAGGCGAGATAATG
CCCGATGGGAAAGTTAACGAACTGTTTGAGCAAGCCGATAATGTACGAATCAAGTGGGGACTGCTGGAAATCAATCCACT
TTGCCTGCTGGCAGCCATTGCTACACCCGAAGCAGGTTTCAGTACGGACGAGTTGCGCTCGTTCCCTATTCGGGAGCGTG
AGATACATGACCTCTTCACGAGCGGAATGGGTAATATGAAAAAATCCGTAAGTACGCAGACTGACCTTCCGGGGAGTGAA
GCCCCCCTATGGACAGCCGGGGCGGGCAATTTAGATAAGTACTGTACGGATAAGACTGCTCTTGCGGCAGACAAGAAAGT
ATATCCTATCGTGTGCCGTGACCGTGAGACACGCATGATGATGGAAATTCTGGGGCGGATGGGTAAGCCCAACGTGCTCA
TCATCGGCGATGCCGGTGTGGGTAAGACTGCTCTGGTAGATGGTTTGGCATGCAGCATCATTGAGGGTACAGTTCCCCAA
TATCTAAAGGACATGACTATCTATGAGCTTGACACAGGAACACTGATTGCGGGTGCTACCTACAAAGGCGAGATAGAAGA
ACGGCTGAAAGGAATCATCAAAGAATTGTCGGCTCACGGCAATGCGATTCTCTTCATTGATGAAATACATACGCTGATCG
ACCCCAAGTCGGGCAACAGCGGAGCGGCAAGCATCCTGAAACCGGAGCTTGCCAAAGGAAATATAACGGTAATCGGAGTC
ACTACGGTGGACGAATACCGTAAACTGATTGAACCGGACCATGCCCTTAACCGGCGTTTTGAAGTATTGCAAGTATCGGA
ACCTGACCTTGCATCCACCGTAAATATGATACAGGCAGCTTTGGAAAGATATGAAAGCTACCACGGTGTGGGGGTAGATG
TAGATTCGTTGCCGGAATGCGTGGCACTCGCCAAGCGTTATGTCAAGGAACGCCGTTTGCCGGATGCCGCTATTGATTTG
ATAGACCGTACCCTCTCTGCGGTTAAGATGATTAACCAGAGCGGGGAAAAAGATATAAAGGGACTGGCAGAGCAGCTTGC
CGCGATTGAAGCGGCGGAAGACCAGCCCGAAGCGGAGCGCACGGAGAAGTTGCGGTTAGTCAACTTCACCATGAAGAACC
GGTTAAGCCCTATCCTTCTGGGAATGCTCTCCGATGGACAGAATGAACCGGAGTCATCAGACTACGGTGAATGGATGGAT
TATATTTTAGGTGTACTTGACCGATTGCGTGAATTGACCAAAGAGAAAATCGGGAAAATCACTTCCCATGAAGTGGCAGC
CGTTATTTCTTCTTCTACAGGTATCCCTATCGGCAAGATAGAGTCGGGCGAGAAAGAGAAGTTGCTCAATATGGAAGATA
TTCTGCGTCGTAGAGTTGTTGGACAGGACAATGCGCTGAAGGTATTGACAGATGCCATTGTCGAATCACGAAGTGGAATG
AACAAACCGGGACAACCGATTGGCTCATTCTTCCTGCTGGGACCTACCGGAACCGGTAAGACCGAGTTGGCAAAAGCATT
GGCAGAAGCACTTTTCAATGACGAAAAGGCGATGATTCGTTTTGATATGTCAGAGTTTAAGGAAGAACATTCGGCAGCCC
TGCTATTGGGAGCGCCTCCGGGATACGTGGGCTACGAAGAAGGTGGCGTACTCGTGAACCGGATACGTCGTCAGCCTTAC
GCGGTGGTGCTTTTCGATGAGATAGAGAAAGCCCATTCTTCCGTTTATGACATCTTCCTGCAAATCATGGACGAAGGCAA
GCTACACGACCGTTTGGGCAAAGAGGGTGATTTTTCCAATTCTATCGTACTGTTTACATCCAATGTAGGTAGCGAATGGC
TTAGCAAACAGATTAATGAGGGCAAGAATCCTTCTACCACTGACCTGATGGAAGTCATGGGCAGTTATTTCCGTCCGGAG
TTTCTTGCCCGTTTGTCGGAAATCGTGCCTTTCTCTCCTATTAACGAAACAATGCTGGTTCGTATCTTTGAGATACAGTT
AAAGGGAGTTATAGCATTGCTTGAGAAGCAGCATATTGACATTGAGATTACGGAGAAGGCAAAGAACCTGCTTGCTACCC
GTGGCTTCACTCCGAAATACGGAGCACGTCAGGTGGCGGGTACGATACGTAACTATATCCGCCGTCCTATCTCAAAGATG
ATTGTTGCAGGAACATTGGCGGCAGGGAATACAGTTGTTGTCGATGTGGCGGATAATGGAGATATTGATTGGAATGTGAA
ATGA