Detailed information of component protein
Summary
| Component ID | T6CP011054 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00907  (Type iii) |
| Strain | Bacteroides fragilis NCTC 9343 |
| Replicon | chromosome |
| Sequence | Protein sequence (143 a.a.); Nucleotide sequence (429 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF9343_RS09460 |
| Coordinate (Strand) | 2365431..2365859 (-) |
| NCBI ID | 499302029 |
| RefSeq | NC_003228 |
| Uniprot ID | A0A015WCC0_BACFG, Q5LDT5_BACFN |
| KEGG ID | bfs:BF9343_1939 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 1.9e-37 | 3..139 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-142 | MFGHKSFLRIGALGDSSISGLYKDSYELENCHFSFNQGTNTDGKPQTDVRGGTLYLTYAGLPQDDMLRWILNSKKYEDGAIVICDDSDEPLEKILFEQAACTGLNIEYTQKGKAYIHTKIILQVRKIKVGETTFENRWTINE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9183 | - | - |
Protein sequence: 143 a.a.
>T6CP011054 NC_003228:c2365859-2365431 [Bacteroides fragilis NCTC 9343] [TssD]
MFGHKSFLRIGALGDSSISGLYKDSYELENCHFSFNQGTNTDGKPQTDVRGGTLYLTYAGLPQDDMLRWILNSKKYEDGA
IVICDDSDEPLEKILFEQAACTGLNIEYTQKGKAYIHTKIILQVRKIKVGETTFENRWTINE*
MFGHKSFLRIGALGDSSISGLYKDSYELENCHFSFNQGTNTDGKPQTDVRGGTLYLTYAGLPQDDMLRWILNSKKYEDGA
IVICDDSDEPLEKILFEQAACTGLNIEYTQKGKAYIHTKIILQVRKIKVGETTFENRWTINE*
Nucleotide sequence: 429 bp
>T6CP011054 NC_003228:c2365859-2365431 [Bacteroides fragilis NCTC 9343] [TssD]
ATGTTTGGACATAAAAGTTTTTTGAGGATAGGTGCTTTGGGCGATTCCAGTATTTCGGGATTGTACAAAGACAGTTATGA
ACTTGAAAATTGCCATTTCAGTTTTAATCAGGGAACGAACACGGATGGCAAACCGCAAACTGATGTACGGGGTGGAACCT
TGTACCTGACTTATGCCGGTTTACCGCAAGATGATATGCTCCGCTGGATACTGAACTCTAAAAAATATGAAGACGGTGCA
ATTGTAATATGCGATGACAGTGATGAACCTTTGGAAAAGATTTTATTTGAGCAGGCAGCCTGTACTGGATTGAATATTGA
ATATACGCAAAAAGGAAAAGCCTATATACATACTAAAATTATTCTCCAAGTACGAAAAATAAAGGTAGGTGAGACAACGT
TTGAAAATCGTTGGACTATTAACGAATAA
ATGTTTGGACATAAAAGTTTTTTGAGGATAGGTGCTTTGGGCGATTCCAGTATTTCGGGATTGTACAAAGACAGTTATGA
ACTTGAAAATTGCCATTTCAGTTTTAATCAGGGAACGAACACGGATGGCAAACCGCAAACTGATGTACGGGGTGGAACCT
TGTACCTGACTTATGCCGGTTTACCGCAAGATGATATGCTCCGCTGGATACTGAACTCTAAAAAATATGAAGACGGTGCA
ATTGTAATATGCGATGACAGTGATGAACCTTTGGAAAAGATTTTATTTGAGCAGGCAGCCTGTACTGGATTGAATATTGA
ATATACGCAAAAAGGAAAAGCCTATATACATACTAAAATTATTCTCCAAGTACGAAAAATAAAGGTAGGTGAGACAACGT
TTGAAAATCGTTGGACTATTAACGAATAA