Detailed information of component protein
Summary
| Component ID | T6CP011053 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00907  (Type iii) |
| Strain | Bacteroides fragilis NCTC 9343 |
| Replicon | chromosome |
| Sequence | Protein sequence (136 a.a.); Nucleotide sequence (408 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF9343_RS09455 |
| Coordinate (Strand) | 2364997..2365404 (-) |
| NCBI ID | 492242918 |
| RefSeq | NC_003228 |
| Uniprot ID | UPI00004E23EF |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 1.7e-33 | 12..134 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-135 | MELFSFLQVDSDLTAWFILDGQEYEMSHFDINFAQSVDHKGQPQDEVRGGIMSITLSQTLPENIYRWGMTSIPKNGSVIFKSKTTNPPLKINFINAYCIRFNRSIANEGGLESQLVISPDEMLINGISFDNHWVK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9914 | - | - |
Protein sequence: 136 a.a.
>T6CP011053 NC_003228:c2365404-2364997 [Bacteroides fragilis NCTC 9343] [TssD]
MELFSFLQVDSDLTAWFILDGQEYEMSHFDINFAQSVDHKGQPQDEVRGGIMSITLSQTLPENIYRWGMTSIPKNGSVIF
KSKTTNPPLKINFINAYCIRFNRSIANEGGLESQLVISPDEMLINGISFDNHWVK*
MELFSFLQVDSDLTAWFILDGQEYEMSHFDINFAQSVDHKGQPQDEVRGGIMSITLSQTLPENIYRWGMTSIPKNGSVIF
KSKTTNPPLKINFINAYCIRFNRSIANEGGLESQLVISPDEMLINGISFDNHWVK*
Nucleotide sequence: 408 bp
>T6CP011053 NC_003228:c2365404-2364997 [Bacteroides fragilis NCTC 9343] [TssD]
ATGGAATTATTTAGTTTTCTACAAGTAGACAGCGACTTAACAGCATGGTTTATCCTTGATGGTCAGGAATATGAGATGAG
CCATTTCGATATAAATTTCGCGCAATCTGTCGACCATAAAGGGCAACCGCAAGATGAAGTACGTGGTGGTATCATGTCCA
TTACATTATCACAAACGCTTCCTGAAAACATTTACAGATGGGGAATGACGTCCATTCCCAAAAACGGGTCTGTGATTTTT
AAATCAAAGACAACAAATCCTCCCTTGAAAATTAATTTCATCAACGCATATTGCATACGATTTAATCGAAGTATAGCCAA
CGAAGGAGGATTAGAAAGTCAACTGGTAATATCTCCTGATGAGATGTTAATAAATGGAATTAGCTTTGACAATCACTGGG
TTAAATAA
ATGGAATTATTTAGTTTTCTACAAGTAGACAGCGACTTAACAGCATGGTTTATCCTTGATGGTCAGGAATATGAGATGAG
CCATTTCGATATAAATTTCGCGCAATCTGTCGACCATAAAGGGCAACCGCAAGATGAAGTACGTGGTGGTATCATGTCCA
TTACATTATCACAAACGCTTCCTGAAAACATTTACAGATGGGGAATGACGTCCATTCCCAAAAACGGGTCTGTGATTTTT
AAATCAAAGACAACAAATCCTCCCTTGAAAATTAATTTCATCAACGCATATTGCATACGATTTAATCGAAGTATAGCCAA
CGAAGGAGGATTAGAAAGTCAACTGGTAATATCTCCTGATGAGATGTTAATAAATGGAATTAGCTTTGACAATCACTGGG
TTAAATAA