Detailed information of component protein
Summary
| Component ID | T6CP011050 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00907  (Type iii) |
| Strain | Bacteroides fragilis NCTC 9343 |
| Replicon | chromosome |
| Sequence | Protein sequence (147 a.a.); Nucleotide sequence (441 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF9343_RS09425 |
| Coordinate (Strand) | 2361394..2361834 (-) |
| NCBI ID | 492242900 |
| RefSeq | NC_003228 |
| Uniprot ID | A0A015V645_BACFG, A0A015Z1N9_BACFG, A0A017NC43_BACFG, A0A016FL49_BACFG, Q5LDU2_BACFN, A0A081TQ21_BACFG, A0A0E2AP14_BACFG |
| KEGG ID | bfb:VU15_08360, bfs:BF9343_1932 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 9.6e-19 | 27..128 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-146 | MKQKYYKLPVRLEKLFEGDIRQLERCSELESIDQHIELLLTTCPGEHRFDPKYGCRIWELDFERIVSTEQWKELFTGYVMQAISTYEKRISDITLSVNLQEVVREEVLDNRMIRKRVDITVLATLNSTGAPCGFGYKLYMGPLSNE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9776 | - | - |
Protein sequence: 147 a.a.
>T6CP011050 NC_003228:c2361834-2361394 [Bacteroides fragilis NCTC 9343] [TssE]
MKQKYYKLPVRLEKLFEGDIRQLERCSELESIDQHIELLLTTCPGEHRFDPKYGCRIWELDFERIVSTEQWKELFTGYVM
QAISTYEKRISDITLSVNLQEVVREEVLDNRMIRKRVDITVLATLNSTGAPCGFGYKLYMGPLSNE*
MKQKYYKLPVRLEKLFEGDIRQLERCSELESIDQHIELLLTTCPGEHRFDPKYGCRIWELDFERIVSTEQWKELFTGYVM
QAISTYEKRISDITLSVNLQEVVREEVLDNRMIRKRVDITVLATLNSTGAPCGFGYKLYMGPLSNE*
Nucleotide sequence: 441 bp
>T6CP011050 NC_003228:c2361834-2361394 [Bacteroides fragilis NCTC 9343] [TssE]
ATGAAACAGAAATACTATAAACTACCGGTACGTTTGGAAAAGCTCTTCGAAGGAGATATCCGGCAACTGGAAAGATGTTC
CGAACTGGAATCCATCGACCAGCACATCGAACTGTTGCTGACCACCTGTCCGGGTGAGCACCGTTTCGACCCCAAATACG
GTTGTCGGATTTGGGAGTTGGACTTTGAGCGCATTGTTTCTACCGAACAATGGAAAGAACTGTTTACCGGATACGTGATG
CAGGCGATTTCCACTTATGAGAAACGCATTTCCGACATCACTCTCTCGGTAAACCTACAAGAAGTCGTCAGGGAAGAAGT
TCTGGATAACCGGATGATACGTAAGCGGGTAGATATTACAGTACTCGCCACATTGAATTCCACCGGTGCTCCCTGCGGTT
TCGGTTACAAATTATACATGGGACCTTTATCAAACGAATAA
ATGAAACAGAAATACTATAAACTACCGGTACGTTTGGAAAAGCTCTTCGAAGGAGATATCCGGCAACTGGAAAGATGTTC
CGAACTGGAATCCATCGACCAGCACATCGAACTGTTGCTGACCACCTGTCCGGGTGAGCACCGTTTCGACCCCAAATACG
GTTGTCGGATTTGGGAGTTGGACTTTGAGCGCATTGTTTCTACCGAACAATGGAAAGAACTGTTTACCGGATACGTGATG
CAGGCGATTTCCACTTATGAGAAACGCATTTCCGACATCACTCTCTCGGTAAACCTACAAGAAGTCGTCAGGGAAGAAGT
TCTGGATAACCGGATGATACGTAAGCGGGTAGATATTACAGTACTCGCCACATTGAATTCCACCGGTGCTCCCTGCGGTT
TCGGTTACAAATTATACATGGGACCTTTATCAAACGAATAA