Detailed information of component protein


Summary

Component ID T6CP011048
Component protein type TssI
T6SS ID (Type) T6SS00907 experimental (Type iii)
Strain Bacteroides fragilis NCTC 9343
Replicon chromosome
Sequence Protein sequence (617 a.a.); Nucleotide sequence (1851 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF9343_RS09415
Coordinate (Strand) 2357670..2359520 (-)
NCBI ID 499302025
RefSeq NC_003228
Uniprot ID A0A015ZSR3_BACFG
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_base_V PF04717.14 6.1e-19 369..448
Phage_GPD PF05954.13 7.9e-11 60..188
DUF2345 PF10106.11 3e-05 506..614
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-616 MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTEFHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKETSYGFLSRLLRSYGEWFYYNGETLQIGDPEIDTESRAGYDVDLTGVSINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGATLGSRSAEKCSEPIFPTEAKLPSIRPAYSAMDLEHYGDAGFHRNYSQLSQIKASSRYCGIRLGELVVTRVPESFPGVKITDLGRYRITEITHTVNYKGQYSNTFCGVPGGTPIMPWGDAVMPVAYPEMARVVSNDDPKNQGRVKVQFMWQEVDGGESYWMRVQSPDAGKSEQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSEGAATDNTVKSMRTRSGHTLEFKDDEGGDWGITLRDINGNVIHLNSKDKNIDITAPETITLTAKNVCINTEENVQITAKKNIDMTVEADINSSAKGNLLLQADKDVLTAAKGNVGIEAKSDINMVGKNIAVEGNSKITLNGGQTQVAGQQTTIQGAANKIEIM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9925 - -


  Protein sequence: 617 a.a.    

>T6CP011048 NC_003228:c2359520-2357670 [Bacteroides fragilis NCTC 9343] [TssI]
MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTE
FHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKE
TSYGFLSRLLRSYGEWFYYNGETLQIGDPEIDTESRAGYDVDLTGVSINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGA
TLGSRSAEKCSEPIFPTEAKLPSIRPAYSAMDLEHYGDAGFHRNYSQLSQIKASSRYCGIRLGELVVTRVPESFPGVKIT
DLGRYRITEITHTVNYKGQYSNTFCGVPGGTPIMPWGDAVMPVAYPEMARVVSNDDPKNQGRVKVQFMWQEVDGGESYWM
RVQSPDAGKSEQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSEGAATDNTVKSMRTRSGHTLEFKDDEG
GDWGITLRDINGNVIHLNSKDKNIDITAPETITLTAKNVCINTEENVQITAKKNIDMTVEADINSSAKGNLLLQADKDVL
TAAKGNVGIEAKSDINMVGKNIAVEGNSKITLNGGQTQVAGQQTTIQGAANKIEIM*

  Nucleotide sequence: 1851 bp    

>T6CP011048 NC_003228:c2359520-2357670 [Bacteroides fragilis NCTC 9343] [TssI]
ATGGCATCGACAAACTTGGACGCTGTAAGCGTGGAGATAAAAGTAGCAGGAAAAGTCTGCGATTATGTGACAATGGAACT
TTTTCAGTCGGTCAGTACACATCACCGTTTCAAAATCAAAGTGAACTACCGTCCGGACAAACCAAGCGTGTGGGCTATCG
GTCCCGATGTGATATTCAAGCAACTGGGTGAGAAGGTATCCATCATCATGACCCACCATGAGAGTGGAGAAAAAACGGAA
TTTCACGGACTGATTTCTGATATTCATGTTGAAGGTTTCGACGGTAATCAGGGATTTGTCATACTGGAAGGGGGAAGCCC
TACCATCCTGCTGGACAGAGACCCCGCTATGGACTGCTATGTAGAGCAAAACCTGAATACGATAGTCAGCGACATACTTG
ATAAGAGCGGGGTGAAAATGAATGTGACCAACAATCCCAAACATACGGACATCATCCCTTATGTTGCCCGCTATAAAGAG
ACAAGCTACGGATTCCTATCCCGTCTGCTCCGCTCTTATGGCGAGTGGTTCTATTACAACGGGGAAACGCTACAGATAGG
AGACCCAGAAATAGATACGGAAAGCCGTGCAGGGTATGATGTAGACCTGACGGGAGTCAGCATCAATGCCACTATCCGTT
CTCTGAATCACAGCACCTATGAGTTCGACCCCGTCAATGATAAGTTCTATTACGACTACAGTGGAACACCTAAGGGTGCT
ACTCTTGGTTCCCGTTCGGCTGAGAAATGCAGTGAACCTATCTTCCCTACCGAGGCAAAACTACCCTCGATAAGACCTGC
GTATAGCGCAATGGATTTGGAACACTACGGGGATGCCGGATTTCACCGCAACTATTCCCAATTGTCTCAAATCAAGGCTT
CAAGCCGTTACTGCGGCATACGACTGGGAGAATTGGTGGTTACCCGTGTACCCGAAAGTTTCCCAGGAGTTAAGATTACC
GATTTGGGACGTTACCGCATCACGGAGATTACCCATACGGTAAACTATAAAGGACAATATAGCAACACCTTCTGTGGCGT
ACCGGGTGGTACGCCCATCATGCCGTGGGGAGATGCCGTGATGCCGGTAGCCTATCCGGAAATGGCGAGAGTAGTGAGCA
ATGACGACCCTAAAAATCAGGGACGTGTCAAAGTACAGTTCATGTGGCAGGAGGTAGATGGCGGTGAGAGCTACTGGATG
CGAGTGCAAAGCCCCGATGCAGGCAAGAGCGAGCAAGTTGCCAAAAACCGTGGTTTTGTGTTTATCCCCGAGCCGGGTGA
TTTGGTGATGGTAGGCTTCGAACAAGGCAATCCAGACCGTCCTTATGTGACAGGCAGCCTTTTCTATAAGGCTAATTCAG
AGGGAGCGGCAACGGATAATACTGTTAAGAGTATGCGGACACGCAGCGGGCATACGCTGGAGTTCAAGGATGATGAGGGT
GGAGACTGGGGTATTACCCTTCGAGACATTAACGGAAATGTTATACATCTGAATAGTAAAGACAAGAATATTGATATTAC
TGCCCCAGAAACCATCACATTGACAGCAAAAAATGTTTGCATCAATACTGAAGAGAATGTGCAGATTACAGCTAAAAAGA
ACATTGATATGACGGTTGAAGCGGATATTAACAGCTCAGCTAAAGGCAATCTACTATTGCAGGCTGACAAAGATGTATTG
ACTGCTGCAAAAGGAAATGTCGGCATCGAGGCAAAATCAGATATCAACATGGTTGGAAAGAATATTGCAGTGGAGGGTAA
TTCCAAGATTACACTAAACGGGGGACAGACACAAGTCGCCGGACAACAGACGACAATACAAGGAGCTGCCAATAAAATAG
AGATTATGTAA