Detailed information of component protein


Summary

Component ID T6CP011047
Component protein type TssN
T6SS ID (Type) T6SS00907 experimental (Type iii)
Strain Bacteroides fragilis NCTC 9343
Replicon chromosome
Sequence Protein sequence (283 a.a.); Nucleotide sequence (849 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF9343_RS09390
Coordinate (Strand) 2351039..2351887 (-)
NCBI ID 499302020
RefSeq NC_003228
Uniprot ID A0A015WCH9_BACFG, Q5LDU9_BACFN
KEGG ID bfs:BF9343_1925
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssN PF17555.4 7.3e-95 10..276
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-9 MNSFFQTLA
Transmembrane helix 10-29 FTYLLYPILGLLLVGLGIFI
Inside 30-40 AKKNALLNNKR
Transmembrane helix 41-63 LVGYTIGAITLLTLPALLGFLDY
Outside 64-67 GFMP
Transmembrane helix 68-90 YGYIFLTMLYLLLGSYNIRMISW
Inside 91-101 VYKDDYKYRHE
Transmembrane helix 102-119 IILTGFILVVSMLFFTLV
Outside 120-128 FNLCNELKY
Transmembrane helix 129-146 GLWASTCLLPFVIVSVFI
Inside 147-282 RTYRIFIAIPIPVYEVWRYTDDTEQDGYFDPGSLQVLQIELYKQESDREPVKLSVKAPDEMQFGTWFHRMIDDYNLKSPQARIDDYAAKEGGWIFYRKPTLLSPRHYIDFNLTVKDNRIRSRDVIVAKRVMEHNEN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9979 - -


  Protein sequence: 283 a.a.    

>T6CP011047 NC_003228:c2351887-2351039 [Bacteroides fragilis NCTC 9343] [TssN]
MNSFFQTLAFTYLLYPILGLLLVGLGIFIAKKNALLNNKRLVGYTIGAITLLTLPALLGFLDYGFMPYGYIFLTMLYLLL
GSYNIRMISWVYKDDYKYRHEIILTGFILVVSMLFFTLVFNLCNELKYGLWASTCLLPFVIVSVFIRTYRIFIAIPIPVY
EVWRYTDDTEQDGYFDPGSLQVLQIELYKQESDREPVKLSVKAPDEMQFGTWFHRMIDDYNLKSPQARIDDYAAKEGGWI
FYRKPTLLSPRHYIDFNLTVKDNRIRSRDVIVAKRVMEHNEN*

  Nucleotide sequence: 849 bp    

>T6CP011047 NC_003228:c2351887-2351039 [Bacteroides fragilis NCTC 9343] [TssN]
ATGAATTCATTCTTCCAAACCCTCGCCTTCACCTACCTGCTCTACCCGATACTGGGATTGTTACTGGTAGGCTTAGGCAT
TTTCATAGCAAAGAAAAACGCTCTGCTGAACAACAAGCGGCTGGTAGGCTATACTATTGGTGCAATCACACTCTTGACAC
TCCCTGCCTTACTGGGATTCCTTGATTACGGTTTCATGCCCTACGGCTACATCTTCCTTACCATGCTGTATCTTCTTCTG
GGCAGTTATAACATACGAATGATTTCATGGGTGTATAAGGACGACTACAAGTATCGCCACGAAATCATACTCACCGGTTT
TATACTGGTGGTATCCATGTTGTTCTTCACCCTTGTCTTCAATCTCTGCAATGAATTAAAATACGGTCTGTGGGCATCCA
CCTGCCTGCTTCCATTCGTCATTGTCTCGGTATTTATCCGCACCTACCGTATCTTTATCGCCATTCCGATTCCCGTGTAT
GAAGTATGGAGATACACAGACGATACCGAGCAGGACGGATATTTTGACCCGGGCAGCCTGCAAGTCCTGCAAATAGAGCT
ATACAAACAAGAAAGTGACCGGGAACCGGTCAAGCTCAGTGTGAAAGCACCCGACGAAATGCAATTCGGCACATGGTTCC
ACCGGATGATTGACGACTATAATCTGAAGTCTCCACAAGCCCGGATAGACGACTATGCAGCAAAAGAGGGAGGATGGATT
TTCTACCGGAAACCCACCTTGCTATCTCCCCGACATTACATAGACTTCAACCTTACCGTAAAGGATAACCGCATCCGCAG
CCGTGATGTAATTGTTGCTAAACGGGTAATGGAACATAATGAGAACTAA