Detailed information of component protein


Summary

Component ID T6CP011046
Component protein type TssK
T6SS ID (Type) T6SS00907 experimental (Type iii)
Strain Bacteroides fragilis NCTC 9343
Replicon chromosome
Sequence Protein sequence (381 a.a.); Nucleotide sequence (1143 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF9343_RS09385
Coordinate (Strand) 2349869..2351011 (-)
NCBI ID 499302019
RefSeq NC_003228
Uniprot ID A0A015YA44_BACFG
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-380 MAKKNLVNWSDCMPLSAAIFNQHDDYFLDSIRDSIEVRTNSYNYGLLPARQNRDGENGIRISQHVTGHIEVRLKYCDAVTASGIRIQFDATETGSELVKNYSVESDTRKNITQWDIILSVDPFHRVGSGDPNPEEVPPRHPNALPSYRLFVMPKGEINISELGSHYLTIGRIRKDAERFMVDADFIPPCTTMKSHPELQEYHAKFGNMFRSLENYSKIIIAKIHNRDNRGELGVHISLICREMLRYLATLQFTYTNKGLYNAPIDVLDSVSSLAHIMYVSFSYLSGTQKEETQKYFYEWSDVTPGSFDEQLADTLEMLYEHTDIRASMVRAYSFMYTLTELWQRLSTLEYIGQHKENIVVSERTTGNNTTGQNKTWSIMD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9823 - -


  Protein sequence: 381 a.a.    

>T6CP011046 NC_003228:c2351011-2349869 [Bacteroides fragilis NCTC 9343] [TssK]
MAKKNLVNWSDCMPLSAAIFNQHDDYFLDSIRDSIEVRTNSYNYGLLPARQNRDGENGIRISQHVTGHIEVRLKYCDAVT
ASGIRIQFDATETGSELVKNYSVESDTRKNITQWDIILSVDPFHRVGSGDPNPEEVPPRHPNALPSYRLFVMPKGEINIS
ELGSHYLTIGRIRKDAERFMVDADFIPPCTTMKSHPELQEYHAKFGNMFRSLENYSKIIIAKIHNRDNRGELGVHISLIC
REMLRYLATLQFTYTNKGLYNAPIDVLDSVSSLAHIMYVSFSYLSGTQKEETQKYFYEWSDVTPGSFDEQLADTLEMLYE
HTDIRASMVRAYSFMYTLTELWQRLSTLEYIGQHKENIVVSERTTGNNTTGQNKTWSIMD*

  Nucleotide sequence: 1143 bp    

>T6CP011046 NC_003228:c2351011-2349869 [Bacteroides fragilis NCTC 9343] [TssK]
ATGGCAAAGAAAAATTTAGTAAACTGGTCGGACTGTATGCCGCTGTCAGCCGCCATCTTCAACCAACATGACGATTACTT
TCTGGATAGCATTCGCGATAGCATAGAAGTACGAACCAACAGTTATAACTACGGGCTGTTGCCCGCACGGCAAAACAGGG
ATGGCGAAAACGGCATCCGTATCAGCCAGCACGTGACCGGACACATCGAAGTGCGGCTGAAATACTGCGATGCGGTCACC
GCTTCGGGTATCCGCATCCAATTTGATGCCACCGAAACGGGAAGCGAATTAGTGAAGAACTATTCTGTAGAATCGGATAC
CCGTAAGAATATCACGCAATGGGACATTATCCTCTCCGTGGATCCGTTCCACCGGGTAGGCTCGGGTGACCCCAATCCGG
AGGAAGTTCCACCCCGCCATCCGAACGCCTTGCCCTCCTATCGGTTGTTTGTGATGCCCAAAGGAGAAATCAATATCAGT
GAACTGGGTTCCCATTACCTGACCATCGGACGTATCCGCAAGGATGCCGAACGATTCATGGTAGATGCCGACTTTATCCC
GCCCTGTACGACGATGAAAAGCCACCCTGAACTGCAAGAGTATCATGCCAAGTTCGGAAATATGTTCCGCTCACTGGAGA
ATTACAGCAAAATTATCATAGCCAAAATACATAATAGGGATAATCGCGGCGAACTGGGTGTGCACATCTCTCTGATATGT
CGGGAGATGCTCCGCTACCTCGCCACCCTGCAATTCACTTATACCAATAAAGGGCTGTACAATGCTCCTATTGATGTACT
GGATTCCGTATCGAGTCTGGCACATATCATGTATGTAAGTTTCAGCTACCTATCAGGGACGCAAAAGGAGGAAACGCAGA
AATATTTCTACGAGTGGAGCGACGTAACGCCCGGTTCGTTCGACGAGCAACTCGCCGATACGTTGGAGATGCTGTACGAA
CATACGGATATCCGGGCTTCGATGGTTCGTGCCTATTCGTTTATGTACACACTTACCGAATTGTGGCAACGGCTCAGTAC
GCTGGAATATATCGGTCAGCATAAGGAGAATATTGTGGTATCGGAACGCACTACGGGGAACAATACTACGGGACAGAACA
AAACATGGAGCATAATGGATTGA