Detailed information of component protein


Summary

Component ID T6CP011045
Component protein type TssG
T6SS ID (Type) T6SS00907 experimental (Type iii)
Strain Bacteroides fragilis NCTC 9343
Replicon chromosome
Sequence Protein sequence (319 a.a.); Nucleotide sequence (957 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF9343_RS09380
Coordinate (Strand) 2348911..2349867 (-)
NCBI ID 499302018
RefSeq NC_003228
Uniprot ID A0A015WJ33_BACFG, Q5LDV1_BACFN
KEGG ID bfs:BF9343_1923
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.8e-10 179..299
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-318 MEHRLPKEIKGFLPPNTMDTDFKAELYGALLSEAGFDTAQIMMVRDGNNLSNVSKDIRSVKHRNHVGIAEGAYIELKTNRRGIYDSLPEGLFHEALFPGKVKDLGLILEEMQQHRNEEFFIRRFFSLLESEVDREGIQAQLLELRYDKKNKYSDYAKLFAACWPVIHILSRQGALLFIKFMPHIHSIRGRLEEVSDALSQILEAPVKVRPKMVQRTIRAQKPNRLGNMRLGANSVNVGVLNSAEADLHIHIGDLPTREVERFLPGNRSRKALEMLADIFLGAWQEFDVTVSVSPDERKTYLKPTGDASPCYLRINTYL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9925 - -


  Protein sequence: 319 a.a.    

>T6CP011045 NC_003228:c2349867-2348911 [Bacteroides fragilis NCTC 9343] [TssG]
MEHRLPKEIKGFLPPNTMDTDFKAELYGALLSEAGFDTAQIMMVRDGNNLSNVSKDIRSVKHRNHVGIAEGAYIELKTNR
RGIYDSLPEGLFHEALFPGKVKDLGLILEEMQQHRNEEFFIRRFFSLLESEVDREGIQAQLLELRYDKKNKYSDYAKLFA
ACWPVIHILSRQGALLFIKFMPHIHSIRGRLEEVSDALSQILEAPVKVRPKMVQRTIRAQKPNRLGNMRLGANSVNVGVL
NSAEADLHIHIGDLPTREVERFLPGNRSRKALEMLADIFLGAWQEFDVTVSVSPDERKTYLKPTGDASPCYLRINTYL*

  Nucleotide sequence: 957 bp    

>T6CP011045 NC_003228:c2349867-2348911 [Bacteroides fragilis NCTC 9343] [TssG]
ATGGAACATCGCTTACCCAAAGAGATAAAGGGGTTTCTTCCGCCCAATACAATGGACACCGACTTCAAGGCAGAGCTATA
CGGAGCCTTGCTGTCGGAAGCCGGGTTCGACACCGCTCAAATTATGATGGTGCGTGACGGTAATAACCTGAGCAATGTTT
CGAAAGATATCCGATCGGTGAAGCATAGGAATCATGTCGGCATAGCGGAGGGGGCATACATAGAACTAAAGACCAACCGC
CGGGGGATTTATGATTCGCTGCCGGAGGGATTGTTCCATGAGGCGCTCTTTCCCGGCAAGGTGAAAGATTTGGGACTTAT
TCTGGAAGAGATGCAGCAACATCGTAACGAAGAGTTCTTTATCCGACGTTTTTTCAGCCTGCTGGAGAGCGAAGTGGACA
GAGAAGGGATACAGGCACAATTGCTCGAATTGCGGTATGATAAAAAGAACAAATATTCTGATTATGCGAAACTCTTTGCC
GCTTGCTGGCCGGTCATTCATATTTTGTCCAGACAGGGGGCGTTGCTGTTCATCAAGTTCATGCCGCATATCCATTCGAT
CCGGGGCAGACTGGAAGAGGTAAGCGACGCACTGTCGCAGATTCTGGAAGCTCCGGTAAAGGTACGCCCCAAAATGGTGC
AACGGACAATAAGGGCACAAAAACCGAACCGGCTGGGGAACATGAGACTGGGAGCAAACAGTGTGAATGTGGGGGTGCTT
AATAGTGCTGAGGCTGATTTGCATATACACATAGGCGACCTGCCAACTCGGGAAGTCGAAAGGTTCCTGCCCGGCAACCG
CTCCCGCAAAGCCCTTGAAATGCTGGCGGATATTTTTCTTGGCGCGTGGCAGGAGTTCGATGTGACGGTCAGCGTTAGCC
CTGACGAACGCAAGACTTATTTAAAACCGACGGGTGACGCCAGTCCGTGTTACCTCAGGATAAACACTTATTTATAA